View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0599_low_82 (Length: 251)

Name: NF0599_low_82
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0599_low_82
NF0599_low_82
[»] chr4 (31 HSPs)
chr4 (1-245)||(546876-547120)
chr4 (15-212)||(55908634-55908831)
chr4 (32-223)||(1548349-1548538)
chr4 (43-228)||(3438500-3438684)
chr4 (43-222)||(1524420-1524599)
chr4 (110-228)||(8184031-8184149)
chr4 (32-213)||(1552690-1552871)
chr4 (109-228)||(8187091-8187210)
chr4 (43-229)||(640894-641080)
chr4 (32-213)||(53761695-53761874)
chr4 (15-160)||(1600467-1600612)
chr4 (109-213)||(1513407-1513511)
chr4 (108-228)||(1537766-1537886)
chr4 (111-237)||(7307831-7307957)
chr4 (110-213)||(12121458-12121561)
chr4 (109-237)||(1489361-1489489)
chr4 (110-194)||(1519143-1519227)
chr4 (118-212)||(659707-659799)
chr4 (43-237)||(7225817-7226011)
chr4 (167-216)||(558490-558539)
chr4 (113-213)||(553474-553574)
chr4 (17-81)||(1533898-1533962)
chr4 (143-213)||(1508037-1508107)
chr4 (110-180)||(12116576-12116646)
chr4 (96-222)||(55505095-55505221)
chr4 (17-65)||(1495830-1495878)
chr4 (96-211)||(532186-532301)
chr4 (32-83)||(21834301-21834352)
chr4 (167-213)||(566184-566230)
chr4 (111-151)||(1545830-1545870)
chr4 (17-81)||(8186999-8187063)
[»] scaffold0295 (1 HSPs)
scaffold0295 (15-228)||(530-743)
[»] chr3 (4 HSPs)
chr3 (32-213)||(13470655-13470836)
chr3 (32-225)||(51113704-51113897)
chr3 (37-228)||(51764368-51764559)
chr3 (42-220)||(51120826-51121004)
[»] chr2 (4 HSPs)
chr2 (15-212)||(1037570-1037767)
chr2 (108-213)||(45245084-45245189)
chr2 (110-223)||(32785773-32785886)
chr2 (41-81)||(45245017-45245057)
[»] chr8 (8 HSPs)
chr8 (43-220)||(27922496-27922670)
chr8 (108-228)||(18315272-18315392)
chr8 (108-222)||(32151287-32151401)
chr8 (110-201)||(17636402-17636493)
chr8 (32-213)||(34936086-34936267)
chr8 (113-209)||(17628018-17628114)
chr8 (173-213)||(44736530-44736570)
chr8 (108-159)||(21235607-21235658)
[»] chr5 (7 HSPs)
chr5 (44-220)||(32267463-32267636)
chr5 (43-224)||(41889488-41889669)
chr5 (43-220)||(41901472-41901646)
chr5 (134-213)||(20478107-20478186)
chr5 (115-213)||(38267562-38267660)
chr5 (32-77)||(28525142-28525187)
chr5 (116-213)||(37937882-37937979)
[»] chr6 (24 HSPs)
chr6 (32-210)||(6432159-6432337)
chr6 (32-230)||(6585160-6585358)
chr6 (32-213)||(6402855-6403036)
chr6 (32-213)||(7994105-7994286)
chr6 (15-225)||(7119140-7119347)
chr6 (15-225)||(7131618-7131825)
chr6 (32-213)||(6415961-6416142)
chr6 (32-213)||(6423212-6423393)
chr6 (108-218)||(6394854-6394964)
chr6 (52-194)||(6589266-6589408)
chr6 (108-213)||(6410001-6410106)
chr6 (32-212)||(6594529-6594709)
chr6 (115-213)||(14802331-14802429)
chr6 (32-213)||(14820688-14820869)
chr6 (134-216)||(10579761-10579843)
chr6 (108-225)||(9411338-9411455)
chr6 (52-213)||(19632434-19632595)
chr6 (113-213)||(11936279-11936379)
chr6 (113-213)||(11948259-11948359)
chr6 (108-159)||(12102315-12102366)
chr6 (32-209)||(6596851-6597028)
chr6 (167-216)||(6603260-6603309)
chr6 (143-213)||(491488-491561)
chr6 (107-159)||(9410751-9410803)
[»] chr7 (4 HSPs)
chr7 (32-213)||(10614588-10614769)
chr7 (108-213)||(15092150-15092255)
chr7 (173-213)||(10170145-10170185)
chr7 (173-213)||(10177670-10177710)
[»] chr1 (4 HSPs)
chr1 (34-218)||(19468424-19468608)
chr1 (111-207)||(52082582-52082678)
chr1 (143-234)||(7554462-7554553)
chr1 (136-213)||(9586634-9586711)
[»] scaffold0807 (1 HSPs)
scaffold0807 (33-216)||(1388-1574)
[»] scaffold0041 (1 HSPs)
scaffold0041 (136-213)||(39179-39256)
[»] scaffold0014 (1 HSPs)
scaffold0014 (44-81)||(88943-88980)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 547120 - 546876
Alignment:
Q  1 ttaagttattgtcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547120 ttaagttattgtcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtga 547021  T
Q  101 acctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  547020 acctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttg 546921  T
Q  201 ttgtgggcttttggaattgttactggaaggatgttttcatctcac 245  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||    
T  546920 ttgtgggcttttggaattgttactggaagaatgttttcatgtcac 546876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 55908634 - 55908831
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    |||||||||||||||  |||||||||| ||| ||||||||||||||||| | || |||||||| ||| || | |||| |  |||||| ||| || ||||     
T  55908634 taacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaata 55908733  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    |||||| |||||||| |||| |||||| | |||||||||||||||  |||  ||||||||||||||||| |||||||||||| |||||||||||||||    
T  55908734 aactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 55908831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 1548349 - 1548538
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaaccta-tttggaatgaactttgaagttccta 130  Q
    |||||||||| ||||||||   |||||||||||| || || ||||||||| |   | |||||  |||||| ||| |||||| ||||||||||| |||| |    
T  1548349 gtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattccca 1548445  T
Q  131 aattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttac 223  Q
    || |||||||| |||||||||||||||||| | |  |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||    
T  1548446 aactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttac 1548538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 228
Target Start/End: Original strand, 3438500 - 3438684
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    ||||||||||||||||||||||| || |||||||||||| |   |||||||| ||||||  | | || |||||||||||| ||| | |||||||||||      
T  3438500 gttttaaggagatgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgtgtgcaatgaactttgatgtttcaaaattggaggtat 3438599  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaa 228  Q
    ||| ||||||||||||||  ||  ||||| ||| |||| |||| ||||||||||||||||||||||||||| || |||||||||||    
T  3438600 tgagcttgtcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaa 3438684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 1524420 - 1524599
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtt-tagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtg 141  Q
    ||||||||||||||||||||  | ||||||||||||||| |||| |||| ||  |  |||| |  | |||||||||||||||||||| || |||||||||    
T  1524420 gttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaacttcat-ggaatgaactttgaagttcccaatttggaggtg 1524518  T
Q  142 gtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgtta 222  Q
     |||| ||||||| ||||| |||  ||||||||||||||||| |||||||| |||||||| ||||||||||| || |||||    
T  1524519 ttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggcttttgcaactgtta 1524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 8184031 - 8184149
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggct 209  Q
    ||||||||||||||||||| ||| | |||||| ||||||||||||||||||  ||  |||||  | |||||||||  |||||||||||||||||||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggct 8184130  T
Q  210 tttggaattgttactggaa 228  Q
    ||||||| |||||||||||    
T  8184131 tttggaactgttactggaa 8184149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 1552690 - 1552871
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgttt---agtagtgaacctatttggaatgaactttgaagttcc 128  Q
    |||||||||| ||||||||   |||||||||||| || |||||||||||| || || ||||   || || ||| ||| ||||| ||||||||||| ||||    
T  1552690 gtatttgtgaagttttaag---atgttgtaagattagacatttgaacttagcccatagttttatagaagggaagctacttggactgaactttgaaattcc 1552786  T
Q  129 taaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
     ||| |||| ||| |||| ||||||||||||| | | ||||||||||||||| ||||||| ||||||| |||| |||||||||||    
T  1552787 caaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtgggcttttg 1552871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 8187091 - 8187210
Alignment:
Q  109 ggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggc 208  Q
    ||||||||||||||| || | ||| |||||||| ||||||||||||||||||  ||  ||||| ||||||| ||||  || |||||||||||||||||||    
T  8187091 ggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggc 8187190  T
Q  209 ttttggaattgttactggaa 228  Q
    ||||| | ||||||||||||    
T  8187191 ttttgcagttgttactggaa 8187210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 641080 - 640894
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    |||||||||| |||||||||  | || |||||||||||| ||  ||||   | ||| |||||| |||||||||| |||||| | || | ||||||||||     
T  641080 gttttaaggatatgttgtaatgttagacatttgaacttagccggttgtgatggagtaaacctacttggaatgaaatttgaactaccaatattggaggtgt 640981  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaag 229  Q
    ||||||||||| ||||||  ||  |||||||||||||||| |||| |||||||| |||  |||| |||||| |  ||||||||||||    
T  640980 tgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaag 640894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 53761695 - 53761874
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||||||||||||| || ||||||||||||||| || | |||| |  |||||| ||| ||||||||||||||| |||||| ||    
T  53761695 gtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcccaa 53761794  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      | |||| | |||||||||||  ||| |  || || ||| ||||||||  ||||||||| |||| |||| |||||||||||    
T  53761795 gctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactc--tgtgatctcgaagaattgtcgtgggcttttg 53761874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 1600612 - 1600467
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    |||||||||||||||  |||||||| | ||||||||||||| || ||| || || |||||||||||| || | |||| | || |||| ||    ||||||    
T  1600612 taacatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatg 1600513  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaa 160  Q
    ||||||||||||| |||| |||||||| ||||||||||| ||||||    
T  1600512 aactttgaagttcttaaactggaggtgttgaacttgtcatatacaa 1600467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 1513407 - 1513511
Alignment:
Q  109 ggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggc 208  Q
    |||||||||||||||||||| ||| | || ||| |||||||||||  ||||| |||  |||||||||||||||| || ||||||||| ||||| ||||||    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggc 1513506  T
Q  209 ttttg 213  Q
    |||||    
T  1513507 ttttg 1513511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 1537766 - 1537886
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    ||||||||||||||||||||| ||| | || ||| ||||||||||| |||||| ||| |||||  ||||||| | ||| ||||||||| ||||| |||||    
T  1537766 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtggg 1537865  T
Q  208 cttttggaattgttactggaa 228  Q
    |||||| || | |||||||||    
T  1537866 cttttgcaacttttactggaa 1537886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 7307957 - 7307831
Alignment:
Q  111 aatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctt 210  Q
    |||||||||| ||||||| |||||||||||  ||||||||||| |||||   ||  |||||||| ||||   | |||||||||||||||||||| |||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggctt 7307858  T
Q  211 ttggaattgttactggaaggatgtttt 237  Q
    ||| |  ||||||||||||| ||||||    
T  7307857 ttgcacctgttactggaaggttgtttt 7307831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 12121458 - 12121561
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggct 209  Q
    ||||||||||||||||||| ||| | || ||| ||||||||||| |||||| |||  |||||||||||||||  || ||||||||| ||||  |||||||    
T  12121458 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 12121557  T
Q  210 tttg 213  Q
    ||||    
T  12121558 tttg 12121561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 237
Target Start/End: Original strand, 1489361 - 1489489
Alignment:
Q  109 ggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggc 208  Q
    |||||||||||||||||||| ||| | || ||| ||||||||||| |||||| ||| ||  | |||||||| | ||| ||||||| | ||||  ||||||    
T  1489361 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacaacgaaacactgtgtgtaatctcaatgtgttgccgtgggc 1489460  T
Q  209 ttttggaattgttactggaaggatgtttt 237  Q
    ||||| || | ||||||||||| ||||||    
T  1489461 ttttgcaactcttactggaagggtgtttt 1489489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 1519143 - 1519227
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaa 194  Q
    ||||||||||||||||||| ||| | |||||| ||||||||||||||||||  ||  ||||  || |||||||||||||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 659799 - 659707
Alignment:
Q  118 tttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    ||||||||||| ||| | |||||| |||||||||||||||||| ||| ||| ||||||||  |||||||||||||| || ||||| |||| ||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaaca--ctatgtgatctcaaggaattgttttggggtttt 659707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 7225817 - 7226011
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    |||||| |||||||||||||||| || ||||||||||||||| | |||  |  |||||| |||      ||||||||||||||||   ||||||||||      
T  7225817 gttttacggagatgttgtaagattagacatttgaacttatcctactgtccaagagtgaagctacgcaacatgaactttgaagttctcgaattggaggtct 7225916  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaaggatgtttt 237  Q
    ||||||||||||||||||  ||  ||||  ||  |||   |||||| ||||||||||||||||| |||||| || | ||||||||| | ||||||    
T  7225917 tgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggacttttgcaactattactggaaagttgtttt 7226011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 558539 - 558490
Alignment:
Q  167 atgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaa 216  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  558539 atgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttggaa 558490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 553574 - 553474
Alignment:
Q  113 tgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    |||||||| ||||||  ||| |||||||| |||||||||||  |||||  ||  |||||||| ||||  ||||||| ||||||||||||| |||||||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggctttt 553475  T
Q  213 g 213  Q
    |    
T  553474 g 553474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 1533898 - 1533962
Alignment:
Q  17 acatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaactta 81  Q
    |||||||||||||  ||||| || ||||||||||||||||||||||||| |  ||||||||||||    
T  1533898 acatatctgaagaaggtattagtcatgttttaaggagatgttgtaagatgacacatttgaactta 1533962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 1508037 - 1508107
Alignment:
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||||| | |||  ||||||||||||| | ||| ||||||||| ||||| |||||||||||    
T  1508037 tgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttg 1508107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 12116576 - 12116646
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactc 180  Q
    ||||||||||||| ||||| || || |||||| |||||||||||||||||| |||  |||||||| |||||    
T  12116576 gaatgaactttgatgttccaaatttagaggtgttgaacttgtcacatacaagtgttgatgatgaatcactc 12116646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 55505095 - 55505221
Alignment:
Q  96 agtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaag 195  Q
    |||||||||| ||||||||||||||  ||| ||  || | |||||| ||||||||||| ||||||  ||  | |||| |||||| ||||||| |||||||    
T  55505095 agtgaacctaattggaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaag 55505194  T
Q  196 agttgttgtgggcttttggaattgtta 222  Q
    | |||| |||| |||||| | ||||||    
T  55505195 aattgtcgtggacttttgcatttgtta 55505221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 1495830 - 1495878
Alignment:
Q  17 acatatctgaagacagtatttgtgatgttttaaggagatgttgtaagat 65  Q
    |||||||||||||  ||||| || |||||||||||||||||||||||||    
T  1495830 acatatctgaagaaggtattggtcatgttttaaggagatgttgtaagat 1495878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 532301 - 532186
Alignment:
Q  96 agtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaag 195  Q
    |||||| ||| ||||||||||||||||||| || ||  | |||||| ||||||||||| ||||||   |  |||||||||  || ||||||| |||||||    
T  532301 agtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacctcaaag 532202  T
Q  196 agttgttgtgggcttt 211  Q
    | |||| ||| |||||    
T  532201 aattgtcgtgagcttt 532186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 21834301 - 21834352
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatc 83  Q
    ||||||| || |||||||||| |||||||||||| | |||||||||||||||    
T  21834301 gtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatc 21834352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 566230 - 566184
Alignment:
Q  167 atgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||||||||||||||||||   ||| |||||||||||    
T  566230 atgatgaaacactctatgtgatctcaaagtactgtcgtgggcttttg 566184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 1545870 - 1545830
Alignment:
Q  111 aatgaactttgaagttcctaaattggaggtggtgaacttgt 151  Q
    |||||||||| ||||||||||| |||||||| |||||||||    
T  1545870 aatgaactttaaagttcctaaactggaggtgttgaacttgt 1545830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 8186999 - 8187063
Alignment:
Q  17 acatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaactta 81  Q
    |||||||||||||  |||||||| | ||||| | |||||||||| |||| ||| |||||||||||    
T  8186999 acatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaactta 8187063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 530 - 743
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    |||||||||||||||  |||||||||| ||| |||||||||||||||||   || |||||||| ||| || | |||| |  |||||| ||| || ||||     
T  530 taacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaatttagcctactgttcaagagtgaaactacttagaata 629  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttgg 214  Q
    |||||| |||||||| |||| |||||| | |||||||||||||||| |||| ||||||||||||||||| ||||||| |||| |||||||||||| ||      
T  630 aactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattac 729  T
Q  215 aattgttactggaa 228  Q
    || |||||||||||    
T  730 aactgttactggaa 743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 13470655 - 13470836
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||| |||||||||||| ||||||||||||||| || |||||  |  |||||| ||| |||||||||||||||  ||||| ||    
T  13470655 gtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaa 13470754  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      |||||||| ||||||||||| ||||||  || |||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  13470755 tctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttg 13470836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 51113704 - 51113897
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | ||||||| |||||||||||| || ||||||||||| ||| |  | |||| |  | |||| ||| |||||||||||||||||| ||| ||    
T  51113704 gtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcccaa 51113803  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactg 225  Q
    | |||||||| |  |||||||| ||||||| ||  ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  51113804 actggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactg 51113897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 51764368 - 51764559
Alignment:
Q  37 tgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattgg 136  Q
    ||||| |||||||||||||||| |||||| |||||||||||| ||||| | |||| |  |||||| ||| ||||||||||||||| |||||| ||  |||    
T  51764368 tgtgaagttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctgg 51764467  T
Q  137 aggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaa 228  Q
    ||||| |  ||||||||  |||||  ||  ||||| |||||||||||| ||||||||||| |||||| ||||||||| || | |||||||||    
T  51764468 aggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaa 51764559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 51120826 - 51121004
Alignment:
Q  42 tgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtg 141  Q
    ||||||| ||||||||||||| || || || ||||||||  ||  ||||| |  |||||| ||   ||||||||||||||||||||  ||||||||||||    
T  51120826 tgttttatggagatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtg 51120925  T
Q  142 gtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgt 220  Q
     |||||||||| |||||||  ||  ||||||||| ||| ||||| ||||||||||||||| ||||||||||| ||||||    
T  51120926 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgt 51121004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 1037570 - 1037767
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||| | || |||||||| ||| || | | || |  |||||| ||| || ||||     
T  1037570 taacatatctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactacttagaata 1037669  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    |||||| |||||||| |||| |||||| | |||||||||||||||  |||  ||||||||||||||||| |||||||||||| |||||||||||||||    
T  1037670 aactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 1037767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 45245084 - 45245189
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||||| |||||||||||||| ||| | |||||| |||| |||||| | ||||| ||  |||||||||||||| |||||||||||||||||||| |||||    
T  45245084 tggaataaactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtggg 45245183  T
Q  208 cttttg 213  Q
    ||||||    
T  45245184 cttttg 45245189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 32785773 - 32785886
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggct 209  Q
    ||||||||||| ||| ||| ||| | |||||| ||||||||||||||||||   |  |||||||| |||| |||||||||||||  |||| |  ||||||    
T  32785773 gaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggct 32785872  T
Q  210 tttggaattgttac 223  Q
    |||| || ||||||    
T  32785873 tttgaaactgttac 32785886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 45245017 - 45245057
Alignment:
Q  41 atgttttaaggagatgttgtaagataaggcatttgaactta 81  Q
    |||||||||||||||||||||| || |||||||| ||||||    
T  45245017 atgttttaaggagatgttgtaacattaggcatttaaactta 45245057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 220
Target Start/End: Complemental strand, 27922670 - 27922496
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    |||||| ||| ||| ||||| || || ||||||||||||||||| |||| | | ||||| |||   | |||||||||||||||||| ||||||||||||     
T  27922670 gttttagggatatgctgtaacattagacatttgaacttatccaagtgttcaatggtgaaacta---gaaatgaactttgaagttcccaaattggaggtgt 27922574  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgt 220  Q
    ||||||||||| |||||| |||  |||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||    
T  27922573 tgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgt 27922496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 18315272 - 18315392
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    ||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||  ||  |||||||| |||||||||||||||||||||||||| || ||    
T  18315272 tggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtagg 18315371  T
Q  208 cttttggaattgttactggaa 228  Q
    |||||| || ||||| |||||    
T  18315372 cttttgcaactgttattggaa 18315392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 32151401 - 32151287
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||||||||||| |||||| | ||  |||||||| | |||||||||  |||||   |  ||||||||||||||||||||||||||||||||||| |||||    
T  32151401 tggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtggg 32151302  T
Q  208 cttttggaattgtta 222  Q
    |||||| || |||||    
T  32151301 cttttgcaactgtta 32151287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 17636402 - 17636493
Alignment:
Q  110 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgt 201  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||| |||   ||  | |||||| || | |||||||||||||||||||||    
T  17636402 gaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 34936086 - 34936267
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||| | |||||||||||||||||||| | || || |||||| ||||  || |||||| |  |||||||||     |||||| |||||| ||||| ||    
T  34936086 gtatttatcatgttttaaggagatgttgtgacattagacatttgtacttggccgattgttcaaaagtgaaccttcacagaatgatctttgatgttccaaa 34936185  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    | | |||||| || |||||||| ||||||  ||  ||||| ||||||||||||  ||| ||||||||||| |||||||||||    
T  34936186 actagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttg 34936267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 17628018 - 17628114
Alignment:
Q  113 tgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggct 209  Q
    |||||||| || || |||||||||||||| |||||||||||||||| |  ||  ||||| || |||||  |||||||||||||| ||||| ||||||    
T  17628018 tgaactttaaactttctaaattggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttgggct 17628114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 44736570 - 44736530
Alignment:
Q  173 aaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  44736570 aaacactcattgtgatctcaaagagttgttgtgggcttttg 44736530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 21235658 - 21235607
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacataca 159  Q
    |||| |||||||||||||||| ||| |||||||| ||||||||||| |||||    
T  21235658 tggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatataca 21235607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 32267636 - 32267463
Alignment:
Q  44 ttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggt 143  Q
    ||||||||| ||||||||| || || ||||||||||||||| | |||| |  |||||| |||   | |||||||||||||||||| |||||||||||  |    
T  32267636 ttttaaggatatgttgtaacattagacatttgaacttatcccagtgttcaacagtgaaacta---gaaatgaactttgaagttcccaaattggaggtatt 32267540  T
Q  144 gaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgt 220  Q
    |||||||||||| ||||| ||  |||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||    
T  32267539 gaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgt 32267463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 41889488 - 41889669
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    |||||||||| ||||||||| || ||  ||||||||||||||   |||| | ||||||| ||| ||| |||||||||| ||||||| ||||||||||||     
T  41889488 gttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgt 41889587  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttact 224  Q
    ||||||| ||| ||||||  ||  ||||||||||||| |||  |||||||||||||||||| ||||||| | ||||||||||    
T  41889588 tgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttact 41889669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 220
Target Start/End: Original strand, 41901472 - 41901646
Alignment:
Q  43 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 142  Q
    ||||||||||  |||||||| || || ||||||||||||||||| ||||   ||||||  |||   | |||  ||||||||||||| ||| ||||||||     
T  41901472 gttttaaggatgtgttgtaacattagacatttgaacttatccaagtgttccatagtgagacta---gaaatagactttgaagttcccaaactggaggtgt 41901568  T
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgt 220  Q
    ||||||||||| ||||||  ||  |||||||| |||| ||| |||||||||||||||||||||| |||||| ||||||    
T  41901569 tgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaaattgt 41901646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 20478107 - 20478186
Alignment:
Q  134 tggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||| ||||||||||| |||||| |||  |||| |||||| | | ||||||||||| || ||||||||||||||||    
T  20478107 tggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttg 20478186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 38267562 - 38267660
Alignment:
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||| ||  | |||||| || ||||| |||||||||  ||  ||||||| ||||||||||| ||||||||||  ||  |||||||||||    
T  38267562 aactttgaagttcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggcttttg 38267660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 28525187 - 28525142
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaa 77  Q
    |||||||| | ||||||||||||||||||||||| ||| |||||||    
T  28525187 gtatttgtcaagttttaaggagatgttgtaagatgagggatttgaa 28525142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 37937979 - 37937882
Alignment:
Q  116 actttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    ||||||||||||| ||  | |||||| || ||||| |||||||||   |  ||||| ||||||||||||| ||||||||||  ||| |||||||||||    
T  37937979 actttgaagttcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttg 37937882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 210
Target Start/End: Complemental strand, 6432337 - 6432159
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | ||||||||||||||||||||  | |  |||||||||||| || ||||| ||  |||||| |||  ||||||||||||||||||||| ||    
T  6432337 gtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaa 6432238  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctt 210  Q
      || ||||| ||||||||||| ||||||  ||  ||||||||||||| |||||||||| ||||| |||||||||||||    
T  6432237 gctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggctt 6432159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 6585160 - 6585358
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| |||||||||||||||||| ||| || ||||||||||||||  |    |||| |  |||||| ||| ||||||| ||||||  |||| |  |    
T  6585160 gtatttgtcatgttttaaggagatgttttaatattaggcatttgaactttactgggtgttcaagagtgaagctacttggaataaactttttagttaccca 6585259  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagg 230  Q
     ||||||||  ||||||||||| ||||||  ||  |||||||||||||||||||||||||||||||||||| || |||||||||| | |||||| ||||    
T  6585260 gttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaagg 6585358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 6403036 - 6402855
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||||||||||||| || ||||||||||||||| |    |||| |  |||||| ||| ||||||| ||||||| ||||||  |    
T  6403036 gtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttcccca 6402937  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    | | || ||| ||||||||||| |||| |  ||  |||||||||||||||||||||||||||||| |||| |||||||||||    
T  6402936 actagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttg 6402855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 7994105 - 7994286
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||| || || |||||  |  |||||| ||| | ||||||||||||| |||||| ||    
T  7994105 gtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaa 7994204  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      | |||||| ||||| ||||| ||||||  || ||||| |||||||| |||||||||||||||| ||||| ||| ||||||    
T  7994205 gctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttg 7994286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 7119347 - 7119140
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    ||||||||||||||   |||||||| | |||||||||||||||| |||||| |  |||||||||||| || | |||| |  |||||| ||| ||||||||    
T  7119347 taacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatg 7119251  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttgg 214  Q
    |||||||  ||||   |  |||||||| ||||||||||| |||| |  ||  |||||||||||||| |||||||||| |||| |||||| ||||||||||    
T  7119250 aactttgttgttcaccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttgg 7119151  T
Q  215 aattgttactg 225  Q
    || | ||||||    
T  7119150 aactattactg 7119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 7131825 - 7131618
Alignment:
Q  15 taacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatg 114  Q
    ||||||||||||||   |||||||| | |||||||||||||||| |||||| |  |||||||||||| || | |||| |  |||||| ||| ||||||||    
T  7131825 taacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatg 7131729  T
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttgg 214  Q
    |||||||  ||||   |  |||||||| ||||||||||| |||| |  ||  |||||||||||||| |||||||||| |||| |||||| ||||||||||    
T  7131728 aactttgttgttcgccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttgg 7131629  T
Q  215 aattgttactg 225  Q
    || | ||||||    
T  7131628 aactattactg 7131618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 6416142 - 6415961
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | ||||||| || ||||||||||||  |||||||||||||| ||  ||||  |  |||||| |||  ||||||| |||||| |||||| ||    
T  6416142 gtatttgtcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctacatggaatggactttgtagttcccaa 6416043  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      |||||||| ||||||||||| ||||||  || |||||| |||| ||||||||||||||||||| |||| | |||||||||    
T  6416042 cctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggcttttg 6415961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 6423393 - 6423212
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| |||||||| ||| |||| || || | |  |||||||||||| || |||||  |  |||||| |||  || |||||||||| ||||||| ||    
T  6423393 gtatttgtcatgttttacggaaatgtcgtgagcttaaacatttgaacttagcctattgtgaacaagtgaagctacgtgcaatgaacttttaagttcccaa 6423294  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      |||||||| ||||||||||| ||||||  || |  ||| |||||||||||| |||||||||||||||||||||| |||||    
T  6423293 gctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggattttg 6423212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 6394964 - 6394854
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||||||||||||| ||||||  |  |||||||| ||||||||||| ||||||  ||  |||||||||| || | |||||||||||||| ||||||||||    
T  6394964 tggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtggg 6394865  T
Q  208 cttttggaatt 218  Q
    |||||| ||||    
T  6394864 cttttgcaatt 6394854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 6589266 - 6589408
Alignment:
Q  52 agatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgt 151  Q
    |||||||||||||| ||||||||||||||| ||   |||     |||||| ||| ||||||||||||||| |||||| |   |||||||| |||||||||    
T  6589266 agatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttgt 6589365  T
Q  152 cacatacaattgtcaatgatgaaacactctatgtgatctcaaa 194  Q
    || |||||| ||| |||||| ||||||| ||| ||||||||||    
T  6589366 caaatacaaatgttaatgataaaacactatatctgatctcaaa 6589408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 6410106 - 6410001
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    ||||||||||||||||||||| ||  || ||||| |||||| |||| ||||||  ||  |||||||||| || |||||||||||||||| ||||||| ||    
T  6410106 tggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtcgg 6410007  T
Q  208 cttttg 213  Q
    ||||||    
T  6410006 cttttg 6410001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 6594529 - 6594709
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||||||||| |||||| |  |||||| ||||||||   |||| |  |||||| |||  |||||| ||||||  |||||| ||    
T  6594529 gtatttgtcaagttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttcccaa 6594628  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    | |||||||| || |||||||| |||||   ||  ||||||| |||||   |||||||||||||| |||||||||||||||    
T  6594629 actggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtgggctttt 6594709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 14802429 - 14802331
Alignment:
Q  115 aactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||| ||  |||| ||| |||| |||||| ||||||  ||  |||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtggtcttttg 14802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 14820869 - 14820688
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | | |||||||| |||||||||| | |  ||||||||||||     ||||| || |||||| |||  |||||| ||||||| |||||| ||    
T  14820869 gtatttgtcaaggtttaaggaaatgttgtaagcttaaacatttgaacttagaattttgttcaggagtgaaactacatggaattaactttgcagttcccaa 14820770  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
     || |||||| ||||||| ||| ||||||  ||  || |||||||||| ||| ||||||| |||| ||||||||||||||||    
T  14820769 gttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttg 14820688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 10579761 - 10579843
Alignment:
Q  134 tggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaa 216  Q
    |||||||| ||||||||||| ||||||  ||  ||||| |||||||||||  ||||||||||| ||||||| |||||||||||    
T  10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttggaa 10579843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 9411455 - 9411338
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||| |||||||||| ||||| ||  |||||||| ||||||||||| |||||  |||    ||||||| |||||||| ||||||||||| |||| ||||     
T  9411455 tggattgaactttgaggttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtgga 9411356  T
Q  208 cttttggaattgttactg 225  Q
    |||||| || ||||||||    
T  9411355 cttttgcaactgttactg 9411338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 213
Target Start/End: Complemental strand, 19632595 - 19632434
Alignment:
Q  52 agatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgt 151  Q
    |||||||||||||||| ||||||||||||| |    |||| | |||| |||||| ||||||| ||||||  |||||| ||  | |||||| || ||||||    
T  19632595 agatgttgtaagataacgcatttgaacttaactcgatgttcaatagttaacctacttggaataaactttctagttcccaagctagaggtgttggacttgt 19632496  T
Q  152 cacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |  ||||||  ||  |||||||   ||| | |||||||||||||| ||||||||||||||||    
T  19632495 cgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgttgtgggcttttg 19632434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 11936279 - 11936379
Alignment:
Q  113 tgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    |||||||||||||||| ||| |||||||| || ||||||||  |||||  ||  | ||| || ||||||||  |||||||||||||||| ||||||||||    
T  11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11936378  T
Q  213 g 213  Q
    |    
T  11936379 g 11936379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 11948259 - 11948359
Alignment:
Q  113 tgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggctttt 212  Q
    |||||||||||||||| ||| |||||||| || ||||||||  |||||  ||  | ||| || ||||||||  |||||||||||||||| ||||||||||    
T  11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11948358  T
Q  213 g 213  Q
    |    
T  11948359 g 11948359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 12102366 - 12102315
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacataca 159  Q
    |||| |||||||||||||||| ||| |||||||| |||||||||||||||||    
T  12102366 tggattgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 6596851 - 6597028
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | ||||| |||||||||  |||||| | ||||||||||| | || | |||| |   ||||| | | ||| ||| ||||||||| ||||  |    
T  6596851 gtatttgtcaagttttcaggagatgtgataagattaagcatttgaactgagccgaatgttcaagtgtgaagcgacttgaaataaactttgaaattcccca 6596950  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggct 209  Q
      |||||||| |||||||||||  ||||| |||  |||||||||||||||| |  |||||||||| ||||| ||||||    
T  6596951 gctggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacactctacgctatctcaaagaattgttctgggct 6597028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 6603260 - 6603309
Alignment:
Q  167 atgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaa 216  Q
    ||||||||||| |||||| ||||||||||||||||  |||||||||||||    
T  6603260 atgatgaaacagtctatgcgatctcaaagagttgtcctgggcttttggaa 6603309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 491561 - 491488
Alignment:
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctca---aagagttgttgtgggcttttg 213  Q
    |||||||||||||||||| ||| || |||| |||||||||||||||| ||   |||||||||| ||| ||||||    
T  491561 tgaacttgtcacatacaagtgttaaagatggaacactctatgtgatcacaattaagagttgttctggacttttg 491488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 9410803 - 9410751
Alignment:
Q  107 ttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacataca 159  Q
    ||||| |||||||||||| ||| || ||||||||| |||| ||||||||||||    
T  9410803 ttggattgaactttgaagctcccaagttggaggtgttgaatttgtcacataca 9410751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 10614769 - 10614588
Alignment:
Q  32 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 131  Q
    |||||||| | |||||||||| |||||||||||| ||||||||||||||| || |||||  |  |||||| ||| ||||||||||| |||  ||||| ||    
T  10614769 gtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaa 10614670  T
Q  132 attggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
      |||||||| ||||||||||| |||| |  || |||||| ||||||||||||||||||| ||||  ||| |||||||||||    
T  10614669 tctggaggtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttg 10614588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 15092150 - 15092255
Alignment:
Q  108 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||||||||||||| ||||||  |  |||||||| |||| |||||| | ||||  || |||||| |||||||||||| ||||||||||| ||||||||||    
T  15092150 tggaatgaactttgcagttcccgagctggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtggg 15092249  T
Q  208 cttttg 213  Q
    ||||||    
T  15092250 cttttg 15092255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 10170145 - 10170185
Alignment:
Q  173 aaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||||||||||||  ||||||||| ||||||    
T  10170145 aaacactctatgtgatctcaaagtattgttgtggacttttg 10170185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 10177670 - 10177710
Alignment:
Q  173 aaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||||||||||||||||||||  ||||||||| ||||||    
T  10177670 aaacactctatgtgatctcaaagtattgttgtggacttttg 10177710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 19468424 - 19468608
Alignment:
Q  34 atttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaat 133  Q
    |||||| | ||||||||||| |||| ||| || |||||||| |||||| || | |||| |  |||||| ||| ||||| ||||||||| |||||| ||      
T  19468424 atttgtcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgtagttcccaagc 19468523  T
Q  134 tggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaatt 218  Q
    |||||||| |||| |||||| ||||||  ||  ||||||||||||| ||||||||||||||||  |||||||| |||||||||||    
T  19468524 tggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaagaactgttgtggacttttggaatt 19468608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 52082678 - 52082582
Alignment:
Q  111 aatgaactttgaagttcctaaattggaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 207  Q
    |||||||||| ||||| | |||||||||||| ||||||||||| | ||||   |  ||||||||||| | |||||||||||||||||||||||||||    
T  52082678 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 52082582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 7554553 - 7554462
Alignment:
Q  143 tgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaaggatgt 234  Q
    ||||||| ||| |||||| |||  |||||||| |||||||| ||||||||||||||||| |||| |||||  || |||||||| ||||||||    
T  7554553 tgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgt 7554462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 9586711 - 9586634
Alignment:
Q  136 gaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||| ||||||||||| |||||  ||| |||||||||||||| ||||||| ||||| || |||| |||| ||||||    
T  9586711 gaggtgttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaatgaattgtcgtggacttttg 9586634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 216
Target Start/End: Original strand, 1388 - 1574
Alignment:
Q  33 tatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaa 132  Q
    ||||||| | |||||||||||||||| |||||| || |||||||||||| ||   |||| |   ||| ||||||||| ||||||||||| |||||||||     
T  1388 tatttgtcaagttttaaggagatgttataagattagacatttgaacttagcctggtgttcatctgtggacctatttgaaatgaactttgtagttcctaag 1487  T
Q  133 ttggaggtggtgaacttgtcacatacaa---ttgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaa 216  Q
     | |||||| || |||||||| ||||||   |||   |||||||||||||||||||||||||||||| |||||  ||| ||||||||    
T  1488 ctagaggtgttggacttgtcaaatacaaatgttgatgatgatgaaacactctatgtgatctcaaagaattgttcagggattttggaa 1574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 39256 - 39179
Alignment:
Q  136 gaggtggtgaacttgtcacatacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 213  Q
    |||||| |||||||| ||  |||||  || |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttg 39179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 88980 - 88943
Alignment:
Q  44 ttttaaggagatgttgtaagataaggcatttgaactta 81  Q
    |||||||||||||||||||||| || ||||||||||||    
T  88980 ttttaaggagatgttgtaagattagacatttgaactta 88943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 402 times since January 2019
Visitors: 3834