View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_85 (Length: 236)
Name: NF0599_low_85
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_85 |
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| [»] scaffold0054 (3 HSPs) |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40583 - 40363
Alignment:
| Q |
1 |
tattctctttctcgtgagaggtttgggaataaagtaaaattagattgcaaaaatctaatcgatcacctatatatttttcgtatctttggtcttggcagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40583 |
tattctctttctcgtgagaggtttgggaataaagtaaaattagattgcaaaaatctaatcgatcacctatatatttttcgtatctttggtcttggcagta |
40484 |
T |
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| Q |
101 |
ttaatggcattgtttgtgttcatgcaaattcaaattgtggtgcaattgtattttggaacccagctacccaagcaataaaactcattcctcctagtcctct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40483 |
ttaatggcattgtttgtgttcatgcaaattcaaattgcggtgcaattgtattttggaacccagctacccaagcaataaaactcattcctcctagtcctct |
40384 |
T |
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| Q |
201 |
tgagttggttgagttgcctat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
40383 |
tgagttggttgagttgcctat |
40363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34226 - 34011
Alignment:
| Q |
1 |
tattctctttctcgtgagaggtttgggaataaagtaaaattagattgcaaaaatctaatcgatcacctatatatttttcgtatctttggtcttggcagta |
100 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34226 |
tattctctttctcatgagaggtttgagaataaagtaaaattagattgcacaaatgtaatcgatcacctatatatttttcgtatctttggtcttggcagta |
34127 |
T |
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| Q |
101 |
ttaatggcattgtttgtgttcatgcaaattcaaattgtggtgcaattgtattttggaacccagctacccaagcaataaaactcattcctcctagtcctct |
200 |
Q |
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| T |
34126 |
ttaatggcattgtttgtgttcatgca------aattgtggtgcaattgtattttggaacccagctacccaagcaataaaactcattcctcctagtcctct |
34033 |
T |
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| Q |
201 |
tgagttggttgagttgcctatc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
34032 |
tgagttggttgagttgcctatc |
34011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 45437 - 45238
Alignment:
| Q |
22 |
tttgggaataaagtaaaattagattgcaaaaatctaatcgatcacctatatatttttcgtatctttggtcttggcagtattaatggcattgtttgtgttc |
121 |
Q |
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|||| |||||||| |||||| ||||||| ||||| ||| |||||| |||||||||||| |||||||||| |||| ||||||||||||| ||| ||| |
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| T |
45437 |
tttgagaataaagcaaaattggattgcacaaatccaattgatcacatatatatttttcatatctttggtattggtcgtattaatggcatacaatgtattc |
45338 |
T |
|
| Q |
122 |
atgcaaattcaaattgtggtgcaattgtattttggaacccagctacccaagcaataaaactcattcctcctagtcctcttgagttggttgagttgcctat |
221 |
Q |
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||| | || |||||| ||| ||||||| || ||||||||||||||||||||||||||| ||| |||||| ||| |||||||| |||||| ||| |||| |
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| T |
45337 |
atgaatatgaaaattgcggtccaattgttttgtggaacccagctacccaagcaataaaaatcaatcctcccagttttcttgagtcggttgacttggctat |
45238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 42445762 - 42445842
Alignment:
| Q |
144 |
aattgtattttggaacccagctacccaagcaataaaactcattcctcctagtcctcttgagttggttgagttgcctatctc |
224 |
Q |
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||||||||| ||||| ||| ||||||||||||| ||| ||||||||| |||| | ||||||| ||||||| | ||||||| |
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| T |
42445762 |
aattgtattgtggaatccatctacccaagcaatcaaattcattcctctcagtcttgttgagttagttgagtcgtctatctc |
42445842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17017 - 16972
Alignment:
| Q |
1 |
tattctctttctcgtgagaggtttgggaataaagtaaaattagatt |
46 |
Q |
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|||||||||||| |||||||||||| |||||| || |||||||||| |
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| T |
17017 |
tattctctttctggtgagaggtttgagaataaggtcaaattagatt |
16972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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