View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_87 (Length: 231)
Name: NF0599_low_87
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_87 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42746244 - 42746464
Alignment:
| Q |
1 |
agacaaaaattgaaatgaaagaaagagtaatgacaatacttgaagaaagttcaggaatgataaccaaaagcttaatgcaatcccctggttgaacaacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42746244 |
agacaaaaattgaaatgaaagaaagagtaatgacaatacttgaagaaagttcaggaatgataaccaaaagcttaatgcaatcccctggttgaacaacatg |
42746343 |
T |
|
| Q |
101 |
agtcaaagcccaaaccaaagcagttcttgaaatatattttgaagctttcactgcaactataacaaccttagaggaagaactcatttcttctacataatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42746344 |
agtcaaagcccaaaccaaagcagttcttgaaatatattttgaagctttcactgcaactataacaaccttagaggaagaactcatttcttctacataatga |
42746443 |
T |
|
| Q |
201 |
tgacccttttgtttattcatc |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
42746444 |
tgacccttttgtttattcatc |
42746464 |
T |
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