View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0599_low_9 (Length: 676)
Name: NF0599_low_9
Description: NF0599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0599_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 29 - 622
Target Start/End: Complemental strand, 7809778 - 7809188
Alignment:
| Q |
29 |
atatatcacattatactcgcttttctttctcttaaagtgtttgtatgtggaagagtgttgtaaaactattgagatacgaagtggtcaaaactagataaca |
128 |
Q |
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| T |
7809778 |
atatatcacattaaacttgcttttctctctcttaaattgtttgtatgtgggagagtgttgtaaaacttttgagatacgaaatggtcaaaactaggtaaca |
7809679 |
T |
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| Q |
129 |
attcaagnnnnnnnngcgaaaaaagataacctcatttactgataaactatattgtccaataaaggatcgtatcgtttacaagtccaatataaggtagaga |
228 |
Q |
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| T |
7809678 |
attcaagttttttta-cgaaaaaagataacctcatttactgataaattatattgtccaataaaggatcgtatcgtttacaagtccaatataaggtagaga |
7809580 |
T |
|
| Q |
229 |
taaatttatttaatagacttgaaaatgatgtaaaatggctaataaatggtcaaattgttttacatggacaaatagaaaattgcacaaacttatcatgaat |
328 |
Q |
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| T |
7809579 |
taaattaatttaatagacttgaaaatgatgtaaaatggctaataaatggtcaaattgttttacatggacaaatagaa--ttgcacaaacttatcatgaat |
7809482 |
T |
|
| Q |
329 |
tttcaatccctcgtccgtatcagtaatatggcaattggcaattgccacccaatccaaaggtcactctcaatatgccaagacaaagtgtaaatccatttca |
428 |
Q |
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| T |
7809481 |
tttcaatccctcgtccgtatcaataatatggcaattggcaattgccacccaatccaaaggtcactctcaatatgccaagacaaagtgtaaatccatttca |
7809382 |
T |
|
| Q |
429 |
aagcttgtcatatactatgaccattttaaggtcgctctcaagttcaatttaacatttgcatcaaatctttaaataattatattcgaagtgtatcagacac |
528 |
Q |
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| T |
7809381 |
aagtttgttatacactatgaccattttaaggtcgctctcaagttcaacttaacatttgcatcaaatctttaaataattatattcgaagcgtgtcagacac |
7809282 |
T |
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| Q |
529 |
taaatacaaatacatcttcagccaaaattcgaaaattgattcctcacattatttgagtataacccactagtcccaaccacaattgttattaaca |
622 |
Q |
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| T |
7809281 |
taaatataaatacatcttcagccaaaattcgaatattgattcctcacattatttgagtataacccactagtcccaaccacaattgttattaaca |
7809188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 669
Target Start/End: Complemental strand, 7809185 - 7809154
Alignment:
| Q |
638 |
cttaaactaagaatcattccattttcatctca |
669 |
Q |
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| T |
7809185 |
cttaaactaagaatcattccattttcatctca |
7809154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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