View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0600-Insertion-2 (Length: 571)

Name: NF0600-Insertion-2
Description: NF0600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0600-Insertion-2
NF0600-Insertion-2
[»] chr3 (16 HSPs)
chr3 (34-271)||(33157158-33157407)
chr3 (426-518)||(23820637-23820732)
chr3 (414-518)||(49146080-49146187)
chr3 (428-518)||(43566788-43566881)
chr3 (414-523)||(13539951-13540063)
chr3 (426-518)||(32508786-32508881)
chr3 (426-518)||(13616066-13616161)
chr3 (449-529)||(14271908-14271990)
chr3 (428-523)||(20244144-20244242)
chr3 (448-511)||(362974-363039)
chr3 (428-518)||(14417878-14417971)
chr3 (428-511)||(16277950-16278036)
chr3 (428-518)||(33206767-33206860)
chr3 (428-518)||(49639038-49639131)
chr3 (484-529)||(31698602-31698647)
chr3 (451-518)||(43774219-43774288)
[»] chr6 (18 HSPs)
chr6 (428-521)||(18244002-18244097)
chr6 (428-523)||(35190773-35190871)
chr6 (428-523)||(12127896-12127994)
chr6 (428-518)||(12089107-12089200)
chr6 (428-518)||(19165361-19165453)
chr6 (426-517)||(6025380-6025473)
chr6 (428-518)||(7563568-7563661)
chr6 (426-511)||(9438310-9438398)
chr6 (428-529)||(20716373-20716477)
chr6 (428-517)||(22389743-22389835)
chr6 (486-521)||(7303888-7303923)
chr6 (414-523)||(10377111-10377223)
chr6 (430-516)||(12101898-12101987)
chr6 (428-518)||(18631482-18631575)
chr6 (428-518)||(25020520-25020613)
chr6 (448-511)||(9424475-9424539)
chr6 (426-511)||(9491734-9491822)
chr6 (426-511)||(30566066-30566154)
[»] chr2 (16 HSPs)
chr2 (426-529)||(42091256-42091361)
chr2 (448-522)||(19905643-19905719)
chr2 (426-517)||(10262747-10262841)
chr2 (428-518)||(580775-580868)
chr2 (428-518)||(30474187-30474280)
chr2 (428-518)||(32891291-32891384)
chr2 (426-518)||(17154657-17154752)
chr2 (484-523)||(41535258-41535297)
chr2 (484-522)||(1605840-1605878)
chr2 (428-518)||(11133085-11133179)
chr2 (428-516)||(20208871-20208961)
chr2 (428-518)||(8234784-8234877)
chr2 (448-511)||(9796928-9796993)
chr2 (449-478)||(27016312-27016341)
chr2 (428-479)||(36520813-36520865)
chr2 (485-529)||(44950976-44951020)
[»] chr4 (22 HSPs)
chr4 (426-523)||(3465591-3465691)
chr4 (428-511)||(32885698-32885784)
chr4 (428-518)||(47017938-47018031)
chr4 (428-523)||(52608555-52608652)
chr4 (414-518)||(20266858-20266966)
chr4 (484-522)||(44074922-44074960)
chr4 (428-519)||(26203778-26203872)
chr4 (426-477)||(9172406-9172458)
chr4 (428-475)||(51077877-51077925)
chr4 (426-518)||(33944355-33944450)
chr4 (484-523)||(48512268-48512307)
chr4 (484-518)||(6330928-6330962)
chr4 (428-511)||(12856194-12856280)
chr4 (411-522)||(534752-534867)
chr4 (430-516)||(548881-548970)
chr4 (415-479)||(10402441-10402506)
chr4 (429-511)||(38433322-38433407)
chr4 (415-479)||(47890695-47890760)
chr4 (417-477)||(52699191-52699252)
chr4 (428-479)||(45350286-45350338)
chr4 (428-479)||(45359765-45359817)
chr4 (428-475)||(55266472-55266520)
[»] chr7 (16 HSPs)
chr7 (428-526)||(21086114-21086215)
chr7 (414-522)||(2366353-2366464)
chr7 (414-518)||(30644165-30644272)
chr7 (428-518)||(30152751-30152844)
chr7 (428-518)||(47552223-47552316)
chr7 (429-518)||(38792223-38792315)
chr7 (428-478)||(24396955-24397006)
chr7 (484-518)||(27907888-27907922)
chr7 (413-477)||(29461821-29461887)
chr7 (484-526)||(35890874-35890916)
chr7 (431-495)||(42260046-42260112)
chr7 (484-522)||(45011646-45011684)
chr7 (415-479)||(30806115-30806180)
chr7 (451-518)||(33202546-33202615)
chr7 (428-475)||(32814837-32814885)
chr7 (426-477)||(43712348-43712400)
[»] chr5 (21 HSPs)
chr5 (428-518)||(42455386-42455479)
chr5 (429-523)||(14487572-14487669)
chr5 (428-518)||(29096300-29096393)
chr5 (426-523)||(23925551-23925651)
chr5 (427-518)||(26169006-26169098)
chr5 (426-511)||(30403758-30403846)
chr5 (414-518)||(32158406-32158513)
chr5 (414-518)||(9577298-9577396)
chr5 (429-479)||(34010546-34010597)
chr5 (432-523)||(42450092-42450186)
chr5 (428-522)||(18478013-18478110)
chr5 (426-508)||(33800901-33800986)
chr5 (428-521)||(2411283-2411379)
chr5 (428-479)||(18872531-18872583)
chr5 (430-518)||(1244719-1244810)
chr5 (426-526)||(20945875-20945978)
chr5 (484-518)||(10508649-10508683)
chr5 (431-479)||(973009-973058)
chr5 (486-526)||(6671770-6671810)
chr5 (429-518)||(7234864-7234956)
chr5 (486-518)||(7645094-7645126)
[»] chr1 (15 HSPs)
chr1 (428-518)||(38019939-38020033)
chr1 (426-518)||(15774304-15774399)
chr1 (426-511)||(19793534-19793622)
chr1 (426-511)||(49251394-49251482)
chr1 (428-529)||(4429463-4429567)
chr1 (428-518)||(15368815-15368908)
chr1 (428-523)||(23345044-23345140)
chr1 (429-511)||(538328-538413)
chr1 (426-522)||(749575-749673)
chr1 (428-511)||(37733765-37733851)
chr1 (451-518)||(11405490-11405559)
chr1 (484-529)||(32711125-32711170)
chr1 (417-477)||(43237772-43237833)
chr1 (428-475)||(9408651-9408699)
chr1 (486-526)||(35840093-35840133)
[»] chr8 (16 HSPs)
chr8 (414-511)||(1032960-1033059)
chr8 (428-522)||(9524967-9525064)
chr8 (428-522)||(24608471-24608568)
chr8 (429-529)||(44360918-44361018)
chr8 (417-516)||(10199736-10199838)
chr8 (428-511)||(15042364-15042450)
chr8 (428-518)||(17987441-17987534)
chr8 (426-523)||(27822078-27822178)
chr8 (414-523)||(4798528-4798640)
chr8 (484-521)||(3379637-3379674)
chr8 (426-519)||(30942590-30942686)
chr8 (448-523)||(36359705-36359782)
chr8 (428-479)||(8682391-8682443)
chr8 (448-511)||(25139886-25139951)
chr8 (428-518)||(27558863-27558955)
chr8 (428-479)||(43847712-43847764)
[»] scaffold0039 (1 HSPs)
scaffold0039 (428-523)||(101841-101939)
[»] scaffold0044 (1 HSPs)
scaffold0044 (484-523)||(49889-49928)
[»] scaffold0229 (1 HSPs)
scaffold0229 (459-516)||(22466-22524)
[»] scaffold1990 (1 HSPs)
scaffold1990 (484-529)||(963-1008)
[»] scaffold0092 (1 HSPs)
scaffold0092 (484-529)||(47298-47343)
[»] scaffold1086 (1 HSPs)
scaffold1086 (426-511)||(2496-2584)
[»] scaffold0191 (1 HSPs)
scaffold0191 (428-479)||(16857-16908)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 34 - 271
Target Start/End: Original strand, 33157158 - 33157407
Alignment:
Q  34 cacttaaaatttgacagattagttgagatggaagagcaac-agttgctc-aac-cagtgatagaaagtgggtcat-------aagtggaataagactgct 123  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||       ||||||||||||||||||    
T  33157158 cacttaaaatttgacagattagttgagatggaagagcaaccagttgctccaacgcagttatagaaagtgggtcataactcataagtggaataagactgct 33157257  T
Q  124 accaccatataatgcatgtatagtacaagtatcc-ccacctatcatatgtagatgtagatgtataggtcaagtattaaaagggatattgat-gnnnnnnn 221  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |           
T  33157258 accaccatataatgcatgtatagtacaagtatccaccacatatcatatgtagatgtagatgtataggtcaagtattaaaagggatattgatggttttttt 33157357  T
Q  222 agctaaaggtattttggtcccgtgtgtatgtttccttagccgacagtacc 271  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33157358 agctaaaggtattttggtccagtgtgtatgtttccttagccgacagtacc 33157407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 426 - 518
Target Start/End: Original strand, 23820637 - 23820732
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||||| |||| ||||||||| |||||| |||||||||||||||  | |||| ||||||||| ||||||||||||||| ||||||    
T  23820637 aactcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccagacaccccacttattcatcttataaggtgaattctagcca 23820732  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 414 - 518
Target Start/End: Original strand, 49146080 - 49146187
Alignment:
Q  414 tcccgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaat 510  Q
    ||||||||| | ||||||||||||||||| |||| ||||||||| |||||||||| |||||||||||  | | ||||||||||||  |||||||||||||    
T  49146080 tcccgtgagcttaactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcactttataaggtgaat 49146179  T
Q  511 tttagcca 518  Q
    | ||||||    
T  49146180 tctagcca 49146187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 43566881 - 43566788
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacc-cccata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| |||||||||| ||||||||| |  | | |||||||||||| ||||||||||||||| ||||||    
T  43566881 ctcagttggtaggacaatgcattattatatgcaggggtcggggttcgaacctcagacaccccacttattcaccttataaggtgaattctagcca 43566788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 523
Target Start/End: Complemental strand, 13540063 - 13539951
Alignment:
Q  414 tcccgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaat 510  Q
    ||||||||||  | ||||||||||||||| |||| |||||||||  |||||| || |||||||||||  | | |||||||||| | ||||||||||||||    
T  13540063 tcccgtgagtatagctcagttggtaggacaatgcattattatatgtaggggttggggttcgaaccccggacaccccacttatttaccttataaggtgaat 13539964  T
Q  511 tttagccattaga 523  Q
    | |||||||||||    
T  13539963 tctagccattaga 13539951  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 518
Target Start/End: Complemental strand, 32508881 - 32508786
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccca--tacccacttattcaacttataaggtgaattttagcca 518  Q
    |||||||||| |||||  |||| ||||||||| |||||||||| ||||||||||| |    |||||||||||| ||||||||||||||| ||||||    
T  32508881 aactcagttgataggataatgcattattatatgcaggggtcggggttcgaaccccgaacaccccacttattcaccttataaggtgaattctagcca 32508786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 518
Target Start/End: Complemental strand, 13616161 - 13616066
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacc-cccata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||| ||||||||||| |||| |||||||||  ||||||||||||||||||| |  | | |||||||||||| ||||||||||||||| ||||||    
T  13616161 aactcggttggtaggacaatgcattattatatgtaggggtcggagttcgaacctcggacaccccacttattcatcttataaggtgaattctagcca 13616066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 529
Target Start/End: Complemental strand, 14271990 - 14271908
Alignment:
Q  449 tattatatacaggggtcggagttcgaaccccc-atacc-cacttattcaacttataaggtgaattttagccattagattatct 529  Q
    |||||||| |||||| |||||||||||||||  | ||| || ||||||| ||||||||||||||| ||||||||||| |||||    
T  14271990 tattatatgcaggggccggagttcgaaccccggacacctcatttattcatcttataaggtgaattctagccattagactatct 14271908  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 523
Target Start/End: Original strand, 20244144 - 20244242
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-catac-ccacttattcaacttataaggtgaattttagccattaga 523  Q
    ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||  ||||  ||| |||||| ||||||||||||||| || ||||||||    
T  20244144 ctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggatacttcacgtattcaccttataaggtgaattctaaccattaga 20244242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 511
Target Start/End: Original strand, 362974 - 363039
Alignment:
Q  448 ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||| ||||||||||||||||||||||  ||| ||||||||||||  ||||||||||||||    
T  362974 ttattatatgcaggggtcggagttcgaaccccggataccccacttattcactttataaggtgaatt 363039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 518
Target Start/End: Original strand, 14417878 - 14417971
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    |||| |||||||||| |||| ||||||||| ||||||  ||||||||||||||  | | |||||||||||| ||||||||||||||| ||||||    
T  14417878 ctcaattggtaggacaatgcattattatatgcaggggctggagttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 14417971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 511
Target Start/End: Complemental strand, 16278036 - 16277950
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc---catacccacttattcaacttataaggtgaatt 511  Q
    |||||||||||||||||||| ||||||||| ||||||||||  ||||||| ||   ||| |||||||||||| |||||||| ||||||    
T  16278036 ctcagttggtaggaccatgcattattatatgcaggggtcgggattcgaactccggacat-cccacttattcaccttataagatgaatt 16277950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 518
Target Start/End: Original strand, 33206767 - 33206860
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| ||||||  || |||||||||||  | | |||||||||||| ||||||||||||||| ||||||    
T  33206767 ctcagttggtaggacaatgcattattatatgcaggggctggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 33206860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 518
Target Start/End: Original strand, 49639038 - 49639131
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccca--tacccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| |||||||||  ||||| ||| ||||||||||| |    |||||||||||| ||| ||||||||||| ||||||    
T  49639038 ctcagttggtaggacaatgcattattatatgtaggggccggggttcgaaccccgaacaccccacttattcaccttgtaaggtgaattctagcca 49639131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 529
Target Start/End: Original strand, 31698602 - 31698647
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccattagattatct 529  Q
    |||||||||||| ||||||||||||||| |||||| |||| |||||    
T  31698602 cccacttattcatcttataaggtgaattctagccactagactatct 31698647  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 518
Target Start/End: Original strand, 43774219 - 43774288
Alignment:
Q  451 ttatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagcca 518  Q
    |||||| |||||||||| |||||||||||  | |||| ||||||||| ||||||||||||||| ||||||    
T  43774219 ttatatgcaggggtcggggttcgaaccccagacaccccacttattcaccttataaggtgaattctagcca 43774288  T

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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 428 - 521
Target Start/End: Complemental strand, 18244097 - 18244002
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccataccc-acttattcaacttataaggtgaattttagccatta 521  Q
    ||||||||||||||| |||| ||||||||| ||| |||||| ||||||||||  |||||| ||||||||| ||||||||||||||| |||||||||    
T  18244097 ctcagttggtaggacaatgcattattatatgcagaggtcggggttcgaacccggataccctacttattcatcttataaggtgaattctagccatta 18244002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 428 - 523
Target Start/End: Original strand, 35190773 - 35190871
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccca--tacccacttattcaacttataaggtgaattttagccattaga 523  Q
    |||||||||||| || |||| ||||||||| |||||||||||||||||||||| |    |||||||||||| ||||||||||||||| |||||| ||||    
T  35190773 ctcagttggtagaacaatgcattattatatgcaggggtcggagttcgaaccccgaacaccccacttattcaccttataaggtgaattctagccactaga 35190871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 428 - 523
Target Start/End: Complemental strand, 12127994 - 12127896
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-catac-ccacttattcaacttataaggtgaattttagccattaga 523  Q
    ||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||  | || ||||||||||| ||||||||||||||| |||||| ||||    
T  12127994 ctcagttggtaggacaatgcattattatatgcaggggtcggaattcgaaccccggacacgccacttattcaccttataaggtgaattctagccactaga 12127896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 518
Target Start/End: Original strand, 12089107 - 12089200
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| |||||| |||||||||||||||  | | |||||||||||| ||||||||||||||| ||||||    
T  12089107 ctcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 12089200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 428 - 518
Target Start/End: Original strand, 19165361 - 19165453
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccataccc-acttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| ||| ||| || ||||||||||| | |||| ||||||||| ||||||||||||||| ||||||    
T  19165361 ctcagttggtaggacaatgcattattatatgcagaggttggggttcgaaccccgacaccccacttattcaccttataaggtgaattctagcca 19165453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 517
Target Start/End: Complemental strand, 6025473 - 6025380
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-atacccacttattcaacttataaggtgaattttagcc 517  Q
    ||||||||||||||||  |||| ||||||||| ||||||||||  ||||||||||  | | ||||||||||| ||||||||||||||| |||||    
T  6025473 aactcagttggtaggataatgcattattatatgcaggggtcgggattcgaaccccggacatccacttattcatcttataaggtgaattctagcc 6025380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 7563661 - 7563568
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| |||||| || |||||||| | |||| ||||||  | | |||||||||||| ||||||||||||||||||||||    
T  7563661 ctcagttggtaggacaatgcattattacatgcaggggtcagggttcaaaccccggacaccccacttattcaccttataaggtgaattttagcca 7563568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 511
Target Start/End: Original strand, 9438310 - 9438398
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||||||||| |||| ||||||||| ||||||| || |||||||||||  | | |||||| ||||| |||||||||||||||    
T  9438310 aactcagttggtaggacaatgcattattatatgcaggggttggggttcgaaccccggacaccccactcattcaccttataaggtgaatt 9438398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 529
Target Start/End: Complemental strand, 20716477 - 20716373
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagccattagat 524  Q
    ||||||||||||||| |||| |||||||||  |||||||||  ||||||| ||  |||||| ||||||||| |||||||| |||||| || ||||||||     
T  20716477 ctcagttggtaggacaatgcattattatatgtaggggtcgggattcgaactccagataccccacttattcatcttataagatgaattctaaccattagac 20716378  T
Q  525 tatct 529  Q
    |||||    
T  20716377 tatct 20716373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 517
Target Start/End: Complemental strand, 22389835 - 22389743
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaa-cccccata-cccacttattcaacttataaggtgaattttagcc 517  Q
    ||||||||||||||| |||| ||||||||| |||||||| | ||||||| |||  | | |||||||||||| ||||||||||||||| |||||    
T  22389835 ctcagttggtaggacaatgcattattatatgcaggggtcagggttcgaatcccggacaccccacttattcaccttataaggtgaattctagcc 22389743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 521
Target Start/End: Original strand, 7303888 - 7303923
Alignment:
Q  486 cacttattcaacttataaggtgaattttagccatta 521  Q
    |||||||||| |||||||||||||||||||||||||    
T  7303888 cacttattcatcttataaggtgaattttagccatta 7303923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 523
Target Start/End: Complemental strand, 10377223 - 10377111
Alignment:
Q  414 tcccgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccca--tacccacttattcaacttataaggtgaat 510  Q
    ||||||||||  | ||||||||||||||| |||| ||||||||| ||| || ||| ||||||||||| |    ||||||||||||  ||||||| |||||    
T  10377223 tcccgtgagtatagctcagttggtaggacaatgcattattatatgcagaggccggggttcgaaccccgaacaccccacttattcacgttataagatgaat 10377124  T
Q  511 tttagccattaga 523  Q
    | |||||| ||||    
T  10377123 tctagccactaga 10377111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 516
Target Start/End: Original strand, 12101898 - 12101987
Alignment:
Q  430 cagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagc 516  Q
    ||||||||||||| || | ||||||||| |||||| ||| |||||||||||  | |||| ||||||||| ||||||||||||||| ||||    
T  12101898 cagttggtaggacaatacattattatatgcaggggccggcgttcgaaccccggacaccctacttattcaccttataaggtgaattctagc 12101987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 518
Target Start/End: Original strand, 18631482 - 18631575
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccca-taccc-acttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| || | || |||||| ||||||||||  |||||||||| | ||||| |||||||||  |||||||||||||| ||||||    
T  18631482 ctcagttggtaggacaatacattgttatatgcaggggtcgggattcgaaccccaaataccccacttattcactttataaggtgaattctagcca 18631575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 25020613 - 25020520
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||| ||||||||| |||| ||||||||| |||||| | | |||||||||||  | | |||||||||||| ||||||||||||||| ||||||    
T  25020613 ctcagctggtaggacgatgcattattatatgcaggggcctgggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 25020520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 511
Target Start/End: Original strand, 9424475 - 9424539
Alignment:
Q  448 ttattatatacaggggtcggagttcgaacccccatacc-cacttattcaacttataaggtgaatt 511  Q
    ||||||||| ||| || ||| ||||||||||| | ||| |||||||||| |||||||||||||||    
T  9424475 ttattatatgcagaggccggggttcgaaccccgacacctcacttattcaccttataaggtgaatt 9424539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 511
Target Start/End: Complemental strand, 9491822 - 9491734
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||||||||| |||| |||||||||  ||||| ||| |||||||||||  | | |||||||||||| |||||||| ||||||    
T  9491822 aactcagttggtaggacaatgcattattatatgtaggggccggggttcgaaccccggacaccccacttattcaccttataagatgaatt 9491734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 511
Target Start/End: Original strand, 30566066 - 30566154
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||||||||| |||| ||||||||| ||| ||| | |||| |||||||  | | |||||||||||| |||||||||||||||    
T  30566066 aactcagttggtaggacaatgcattattatatgcagaggttgaagtttgaaccccggacaccccacttattcaccttataaggtgaatt 30566154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 426 - 529
Target Start/End: Complemental strand, 42091361 - 42091256
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccata-cccacttattcaacttataaggtgaattttagccattaga 523  Q
    ||||||||||||||||| |||| ||||||||| |||| | ||||||||||||||  | | |||||||||||| |||| ||||||||||||||||| ||||    
T  42091361 aactcagttggtaggacaatgcattattatattcaggagccggagttcgaacccgaacaacccacttattcaccttacaaggtgaattttagccactaga 42091262  T
Q  524 ttatct 529  Q
     |||||    
T  42091261 ctatct 42091256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 522
Target Start/End: Complemental strand, 19905719 - 19905643
Alignment:
Q  448 ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagccattag 522  Q
    |||||||||||||||||||| |||||||||||  | |||| ||||||||| ||||||||||||||| ||||||||||    
T  19905719 ttattatatacaggggtcggggttcgaaccccggacacccgacttattcaccttataaggtgaattctagccattag 19905643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 426 - 517
Target Start/End: Original strand, 10262747 - 10262841
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcc 517  Q
    ||||||||||||||||| |||| ||||||||| |||||||||| |||||||||||  | | |||||||||||| ||||||| ||||||| |||||    
T  10262747 aactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcaccttataaagtgaattatagcc 10262841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 580868 - 580775
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||  | | |||||||||||| |||||||| |||||| ||||||    
T  580868 ctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcaccttataagatgaattctagcca 580775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 30474280 - 30474187
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| |||||| ||  |||||||||||  | |||| ||||||||| ||||||||||||||| ||||||    
T  30474280 ctcagttggtaggacaatgcattattatatgcaggggccgaggttcgaaccccagacaccccacttattcaccttataaggtgaattctagcca 30474187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 518
Target Start/End: Original strand, 32891291 - 32891384
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| ||||||||||  ||||||||||  | | |||||||||||| |||||||| |||||| ||||||    
T  32891291 ctcagttggtaggacaatgcattattatatgcaggggtcggttttcgaaccccggacaccccacttattcatcttataagatgaattctagcca 32891384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 518
Target Start/End: Original strand, 17154657 - 17154752
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||| ||||||||||| |||| ||||||||| |||||| ||| |||||||||||  | | |||||||||||| |||||||||||| || ||||||    
T  17154657 aactcggttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcaccttataaggtgagttctagcca 17154752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 523
Target Start/End: Original strand, 41535258 - 41535297
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccattaga 523  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  41535258 cccacttattcactttataaggtgaattttagccattaga 41535297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 522
Target Start/End: Complemental strand, 1605878 - 1605840
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccattag 522  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  1605878 cccacttattcatcttataaggtgaatttcagccattag 1605840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 518
Target Start/End: Original strand, 11133085 - 11133179
Alignment:
Q  428 ctcagttggtagg-accatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||| || |||| || |||||| |||||||||| |||||||||||  | | |||||||||||| ||||||||||||||| ||||||    
T  11133085 ctcagttggtagggacaatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 11133179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 516
Target Start/End: Original strand, 20208871 - 20208961
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-atacccacttattcaacttataaggtgaattttagc 516  Q
    ||||||||||| ||| |||| ||||||||||||| ||| |  |||||||||||  |  |||||||||||| ||||||| ||||||||||||    
T  20208871 ctcagttggtaagacaatgcattattatatacagaggttgaggttcgaaccccagacccccacttattcaccttataatgtgaattttagc 20208961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 8234877 - 8234784
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| || | |||||||||  ||||| ||| |||||||||||  | | |||||||||||| ||||||||||||||| ||||||    
T  8234877 ctcagttggtaggacaatacattattatatgtaggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 8234784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 511
Target Start/End: Original strand, 9796928 - 9796993
Alignment:
Q  448 ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||| |||||||||| |||||||||||  | | |||||||||||| |||||||||||||||    
T  9796928 ttattatatgcaggggtcggggttcgaaccccggacaccccacttattcatcttataaggtgaatt 9796993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 478
Target Start/End: Original strand, 27016312 - 27016341
Alignment:
Q  449 tattatatacaggggtcggagttcgaaccc 478  Q
    ||||||||||||||||||||||||||||||    
T  27016312 tattatatacaggggtcggagttcgaaccc 27016341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 479
Target Start/End: Complemental strand, 36520865 - 36520813
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc 479  Q
    ||||||||||||||| |||| |||||||||  ||||||||| |||||||||||    
T  36520865 ctcagttggtaggacaatgcattattatatgtaggggtcggggttcgaacccc 36520813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 529
Target Start/End: Original strand, 44950976 - 44951020
Alignment:
Q  485 ccacttattcaacttataaggtgaattttagccattagattatct 529  Q
    ||||||||||| ||||||||||||||| |||||| ||| ||||||    
T  44950976 ccacttattcatcttataaggtgaattctagccactaggttatct 44951020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 426 - 523
Target Start/End: Original strand, 3465591 - 3465691
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagccattag 522  Q
    ||||||||||||||||| |||| ||||||||| |||||| |||||||||||||||  | | |||||||||||| ||||||||||||||| |||||| |||    
T  3465591 aactcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccggacaccccacttattcaccttataaggtgaattctagccactag 3465690  T
Q  523 a 523  Q
    |    
T  3465691 a 3465691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 428 - 511
Target Start/End: Original strand, 32885698 - 32885784
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacc-cccata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||||||| |||| ||||||||| |||||||||||||||||||| |  | | |||||||||||| |||||||||||||||    
T  32885698 ctcagttggtaggacaatgcattattatatgcaggggtcggagttcgaacctcggacaccccacttattcaccttataaggtgaatt 32885784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 47018031 - 47017938
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||  | | |||||||||||| ||||||||||||||| ||||||    
T  47018031 ctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 47017938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 523
Target Start/End: Complemental strand, 52608652 - 52608555
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-atacccacttattcaacttataaggtgaattttagccattaga 523  Q
    ||||||||||||||| |||| ||||||||| || || ||||||||||||||||  | ||||||||||||| |||| |||  ||||| |||||||||||    
T  52608652 ctcagttggtaggacaatgcattattatatgcatggatcggagttcgaaccccggacacccacttattcatcttacaagacgaattctagccattaga 52608555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 518
Target Start/End: Original strand, 20266858 - 20266966
Alignment:
Q  414 tcccgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc---catacccacttattcaacttataaggtgaa 509  Q
    ||||||||| | | |||| |||||||||| |||| ||||||||| |||||| | ||||| |||||||   ||  |||||||||||| |||||||||||||    
T  20266858 tcccgtgagcttagctcatttggtaggacaatgcattattatatgcaggggccagagtttgaaccccggacacccccacttattcaccttataaggtgaa 20266957  T
Q  510 ttttagcca 518  Q
    || ||||||    
T  20266958 ttctagcca 20266966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 522
Target Start/End: Original strand, 44074922 - 44074960
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccattag 522  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  44074922 cccacttattcaccttataaggtgaattttagccattag 44074960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 519
Target Start/End: Complemental strand, 26203872 - 26203778
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc---catacccacttattcaacttataaggtgaattttagccat 519  Q
    |||||||||||||||  ||| |||||||||| |||||| || ||| |||||||   ||| |||||||||||| ||||||||||||||| |||||||    
T  26203872 ctcagttggtaggacagtgcattattatataaaggggttggggtttgaacccctgacat-cccacttattcatcttataaggtgaattctagccat 26203778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 477
Target Start/End: Complemental strand, 9172458 - 9172406
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacc 477  Q
    ||||||||||||||||| |||| ||||||||| |||||||||| |||||||||    
T  9172458 aactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaacc 9172406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 475
Target Start/End: Original strand, 51077877 - 51077925
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaa 475  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  51077877 ctcagttggtaggacaatgcattattatatgcaggggtcggagttcgaa 51077925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 518
Target Start/End: Complemental strand, 33944450 - 33944355
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccca-tac-ccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||||  |||| ||||||||| |||||| ||| ||||||||| | | ||| |||||||||||  |||||||||||||| ||||||    
T  33944450 aactcagttggtaggataatgcattattatatgcaggggccggggttcgaacctcgaatactccacttattcattttataaggtgaattctagcca 33944355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 523
Target Start/End: Original strand, 48512268 - 48512307
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccattaga 523  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  48512268 cccacttattcaccttataaggtgaattttagccactaga 48512307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 518
Target Start/End: Complemental strand, 6330962 - 6330928
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagcca 518  Q
    |||||||||||| ||||||||||||||||||||||    
T  6330962 cccacttattcaccttataaggtgaattttagcca 6330928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 511
Target Start/End: Original strand, 12856194 - 12856280
Alignment:
Q  428 ctcagttggtaggaccatgct-tattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||||||  ||||  ||||||||  |||||||||||||||||||||  | | |||||||||||| |||||||||||||||    
T  12856194 ctcagttggtaggataatgcactattatatgaaggggtcggagttcgaaccccggacaccccacttattcaccttataaggtgaatt 12856280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 522
Target Start/End: Complemental strand, 534867 - 534752
Alignment:
Q  411 ttttcccgtgagttcaactcagttggtaggaccatgctt-attatatacaggggtcggagttcgaacccc---catacccacttattcaacttataaggt 506  Q
    ||||||||||||   | |||| |||||||||| |||| | ||||||| |||||||||| ||| ||| |||   ||  |||||||||||| ||||||||||    
T  534867 ttttcccgtgagcatagctcaattggtaggacaatgcatcattatatgcaggggtcggggtttgaatcccggacacccccacttattcaccttataaggt 534768  T
Q  507 gaattttagccattag 522  Q
    ||||| || |||||||    
T  534767 gaattctaaccattag 534752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 516
Target Start/End: Complemental strand, 548970 - 548881
Alignment:
Q  430 cagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagc 516  Q
    ||||||||||||| |||| ||||||||| |||||| ||| ||||||| | |  | |||| ||||||||| ||||||||||||||||||||    
T  548970 cagttggtaggacaatgcattattatatgcaggggccggggttcgaaactcagacaccccacttattcaccttataaggtgaattttagc 548881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 10402441 - 10402506
Alignment:
Q  415 cccgtgagttcaactcagttggtag-gaccatgcttattatatacaggggtcggagttcgaacccc 479  Q
    |||||||| | |||||||||||||| ||   ||| |||||||| ||||||||||||||||||||||    
T  10402441 cccgtgagcttaactcagttggtagagatattgcatattatatgcaggggtcggagttcgaacccc 10402506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 511
Target Start/End: Original strand, 38433322 - 38433407
Alignment:
Q  429 tcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaatt 511  Q
    ||||||| |||||| |||| |||||||||  ||| |||||||||||||||||  | |||| ||||||||| |||||||||||||||    
T  38433322 tcagttgataggacaatgcattattatatgtaggagtcggagttcgaaccccagacaccccacttattcaccttataaggtgaatt 38433407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 47890695 - 47890760
Alignment:
Q  415 cccgtgagttcaactcagttggtag-gaccatgcttattatatacaggggtcggagttcgaacccc 479  Q
    |||||||||| |||||||||||||| ||   ||| |||||||| |||||||||| |||||||||||    
T  47890695 cccgtgagttaaactcagttggtagagatattgcatattatatgcaggggtcggggttcgaacccc 47890760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 477
Target Start/End: Original strand, 52699191 - 52699252
Alignment:
Q  417 cgtgagttcaactcagttggtaggaccat-gcttattatatacaggggtcggagttcgaacc 477  Q
    |||||||| |||||||||| |||||  || || |||||||||||||||| ||||||||||||    
T  52699191 cgtgagtttaactcagttgataggaatattgcatattatatacaggggttggagttcgaacc 52699252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 45350286 - 45350338
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc 479  Q
    |||||||||||||||  ||| ||||||||| ||| ||||||||||||||||||    
T  45350286 ctcagttggtaggacagtgcattattatatgcagaggtcggagttcgaacccc 45350338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 45359765 - 45359817
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc 479  Q
    |||||||||||||||  ||| ||||||||| ||| ||||||||||||||||||    
T  45359765 ctcagttggtaggacagtgcattattatatgcagaggtcggagttcgaacccc 45359817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 475
Target Start/End: Complemental strand, 55266520 - 55266472
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaa 475  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||||||    
T  55266520 ctcagttggtagaacaatgcattattatatgcaggggtcggagttcgaa 55266472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 526
Target Start/End: Original strand, 21086114 - 21086215
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaac-ccccataccc-acttattcaacttataaggtgaattttagccattagat 524  Q
    ||||||||||||||| |||| ||||||||| ||||| ||| ||||||||| ||  | |||| ||||||||| |||||||| |||||||||||||||||||    
T  21086114 ctcagttggtaggacaatgcattattatatgcagggatcgaagttcgaactccggacacccaacttattcaccttataagatgaattttagccattagat 21086213  T
Q  525 ta 526  Q
    ||    
T  21086214 ta 21086215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 522
Target Start/End: Original strand, 2366353 - 2366464
Alignment:
Q  414 tcccgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaat 510  Q
    ||||||||||  |||||||||| |||||| |||| ||||||||| |||||||||| |||||||| |   | |||| ||||||||| ||||||||||||||    
T  2366353 tcccgtgagtataactcagttgataggacaatgcattattatatgcaggggtcggggttcgaactctagacaccccacttattcaccttataaggtgaat 2366452  T
Q  511 tttagccattag 522  Q
    | ||||||||||    
T  2366453 tctagccattag 2366464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 518
Target Start/End: Original strand, 30644165 - 30644272
Alignment:
Q  414 tcccgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaat 510  Q
    ||||||||||  | ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||  | |||| ||||||||| ||||||||||||||    
T  30644165 tcccgtgagtatagctcagttggtaggacaatgcattattatatgcaggggccggtgttcgaaccccagacaccccacttattcaccttataaggtgaat 30644264  T
Q  511 tttagcca 518  Q
    | ||||||    
T  30644265 tctagcca 30644272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 428 - 518
Target Start/End: Original strand, 30152751 - 30152844
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccca--tacccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| |||||||||| ||||||||| ||||||||||| |    |||||||||||| |||||||| |||||| ||||||    
T  30152751 ctcagttggtaggacaatgcattattatatataggggtcggggttcgaaccccgaacaccccacttattcaccttataagatgaattctagcca 30152844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 518
Target Start/End: Original strand, 47552223 - 47552316
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| || ||| ||| |||||||||||  | |||| ||||||||| ||||||||||||||| ||||||    
T  47552223 ctcagttggtaggacaatgcattattatatgcaagggccggggttcgaaccccggacaccctacttattcaccttataaggtgaattctagcca 47552316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 518
Target Start/End: Original strand, 38792223 - 38792315
Alignment:
Q  429 tcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagcca 518  Q
    |||||||||| ||| |||| ||||||||| |||||||| ||||| |||||||  | |||| ||||||||| ||||||||||||||| ||||||    
T  38792223 tcagttggtaagacaatgcattattatatgcaggggtcagagtttgaaccccggacaccctacttattcaccttataaggtgaattctagcca 38792315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 24396955 - 24397006
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccc 478  Q
    ||||||||| ||||| |||| ||||||||| |||||||||||||||||||||    
T  24396955 ctcagttggcaggacaatgcattattatatgcaggggtcggagttcgaaccc 24397006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 518
Target Start/End: Complemental strand, 27907922 - 27907888
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagcca 518  Q
    |||||||||||| ||||||||||||||||||||||    
T  27907922 cccacttattcatcttataaggtgaattttagcca 27907888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 477
Target Start/End: Complemental strand, 29461887 - 29461821
Alignment:
Q  413 ttcccgtgagttcaactcagttggta-ggaccatgcttattatatacaggggtcgga-gttcgaacc 477  Q
    |||||||||||| ||||||||||||| |||| |||| || ||||| ||||||||||| |||||||||    
T  29461887 ttcccgtgagtttaactcagttggtagggacaatgcataatatatgcaggggtcggaggttcgaacc 29461821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 526
Target Start/End: Complemental strand, 35890916 - 35890874
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccattagatta 526  Q
    |||||||||||| ||||||||||||||| |||||| |||||||    
T  35890916 cccacttattcatcttataaggtgaattctagccactagatta 35890874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 495
Target Start/End: Complemental strand, 42260112 - 42260046
Alignment:
Q  431 agttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccata-cccacttattca 495  Q
    ||||||||| || |||| |||||||||| ||||||||||||||||||||| | | ||||||||||||    
T  42260112 agttggtagaacaatgcattattatatataggggtcggagttcgaaccccaacatcccacttattca 42260046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 522
Target Start/End: Complemental strand, 45011684 - 45011646
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccattag 522  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  45011684 cccacttattcaccttataaggtgaattctagccattag 45011646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 30806115 - 30806180
Alignment:
Q  415 cccgtgagttcaactcagttggtaggaccat-gcttattatatacaggggtcggagttcgaacccc 479  Q
    |||||||||| | |||||||||||||   || || |||||||| ||||||||||||||||||||||    
T  30806115 cccgtgagtttagctcagttggtagggatattgcatattatatgcaggggtcggagttcgaacccc 30806180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 518
Target Start/End: Complemental strand, 33202615 - 33202546
Alignment:
Q  451 ttatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||| ||| |||||||||||  | | |||||||||||| ||||||||||||||| ||||||    
T  33202615 ttatatacaggggccggggttcgaaccccggacaccccacttattcatcttataaggtgaattctagcca 33202546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 475
Target Start/End: Original strand, 32814837 - 32814885
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaa 475  Q
    |||||||||||||  ||||| ||||||||| ||||||||||||||||||    
T  32814837 ctcagttggtagggacatgcattattatatgcaggggtcggagttcgaa 32814885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 477
Target Start/End: Complemental strand, 43712400 - 43712348
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacc 477  Q
    |||||||||||||||  ||||| || ||||||||||||||||| |||||||||    
T  43712400 aactcagttggtagggacatgcattgttatatacaggggtcggggttcgaacc 43712348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 42455479 - 42455386
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-catac-ccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| |||||| |||||||||||||||  | || ||||||||||| ||||||||||||||| ||||||    
T  42455479 ctcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccggacactccacttattcaccttataaggtgaattctagcca 42455386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 523
Target Start/End: Original strand, 14487572 - 14487669
Alignment:
Q  429 tcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ata-cccacttattcaacttataaggtgaattttagccattaga 523  Q
    |||||||||||||| |||| |||||||||  |||||| || ||||||||| |  ||| |||||||||||| ||||||||||||||| |||||||||||    
T  14487572 tcagttggtaggacaatgcattattatatgtaggggttggggttcgaacctcggatatcccacttattcaccttataaggtgaattctagccattaga 14487669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 29096393 - 29096300
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| || ||| |||||||||||||||  | | |||||||||||| ||||||||||||||| ||||||    
T  29096393 ctcagttggtaggacaatgcattattatatgcaagggccggagttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 29096300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 523
Target Start/End: Original strand, 23925551 - 23925651
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagccattag 522  Q
    |||||||||| |||||| |||| ||||||||| |||||||| | ||||||| |||  |||||| ||||||||| ||||||||||||||| |||||| |||    
T  23925551 aactcagttgataggacaatgcattattatatgcaggggtctgggttcgaatcccggataccccacttattcatcttataaggtgaattctagccactag 23925650  T
Q  523 a 523  Q
    |    
T  23925651 a 23925651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 518
Target Start/End: Complemental strand, 26169098 - 26169006
Alignment:
Q  427 actcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccatacccacttattcaacttataaggtgaattttagcca 518  Q
    |||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||     | ||||||||| |||||||||| |||| ||||||    
T  26169098 actcagttggtaggacaatgcattattatatgcaggggttggagttcgaaccccggacacgacttattcaccttataaggtaaattctagcca 26169006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 511
Target Start/End: Original strand, 30403758 - 30403846
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||||||||| || | |||||||||||||||| ||||||| |||||||  | | |||||||||||| |||||||||||||||    
T  30403758 aactcagttggtaggacaatacattattatatacaggggccggagtttgaaccccggacaccccacttattcaccttataaggtgaatt 30403846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 518
Target Start/End: Complemental strand, 32158513 - 32158406
Alignment:
Q  414 tcccgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccca--tacccacttattcaacttataaggtgaat 510  Q
    ||||||||| | | |||| |||||||||| |||| ||||||||| |||||| ||| ||||||||||| |    |||||||||||| ||||||||||||||    
T  32158513 tcccgtgagcttagctcaattggtaggacaatgcattattatatgcaggggccggggttcgaaccccgaacaccccacttattcaccttataaggtgaat 32158414  T
Q  511 tttagcca 518  Q
    | ||||||    
T  32158413 tctagcca 32158406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 518
Target Start/End: Original strand, 9577298 - 9577396
Alignment:
Q  414 tcccgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccatacccacttattcaacttataaggtgaattt 512  Q
    ||||||||||  ||||||||||||||||| |||| ||||||||| || ||| ||| ||||||||       |||||||||||| |||||||||||||||     
T  9577298 tcccgtgagtataactcagttggtaggacaatgcattattatatgcatgggccggggttcgaac-------cccacttattcaccttataaggtgaattc 9577390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 479
Target Start/End: Original strand, 34010546 - 34010597
Alignment:
Q  429 tcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc 479  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||||||||    
T  34010546 tcagttggtaggacaatgcattattatatataggggtcggagttcgaacccc 34010597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 523
Target Start/End: Original strand, 42450092 - 42450186
Alignment:
Q  432 gttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccca-taccc-acttattcaacttataaggtgaattttagccattaga 523  Q
    ||||||||||| |||| |||||||||  |||||  |||||||||||||  | ||||| ||||||||||||||||||||||||| |||||| ||||    
T  42450092 gttggtaggacaatgcattattatatgtaggggctggagttcgaaccctaaataccctacttattcaacttataaggtgaattctagccactaga 42450186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 522
Target Start/End: Original strand, 18478013 - 18478110
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagccattag 522  Q
    ||||||||||||||| |||| ||||||||| | |||| ||| ||||||||||   | |||| ||||||||| ||||||||||||||| ||||||||||    
T  18478013 ctcagttggtaggacaatgcattattatatgctggggccggggttcgaaccctggacaccccacttattcaccttataaggtgaattctagccattag 18478110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 426 - 508
Target Start/End: Original strand, 33800901 - 33800986
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtga 508  Q
    ||||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||  | |||| ||||||||| ||||||||||||    
T  33800901 aactcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccagacaccccacttattcaccttataaggtga 33800986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 521
Target Start/End: Complemental strand, 2411379 - 2411283
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagccatta 521  Q
    ||||||||||||||| |||  ||||||||| |||||| |||||||||||||||  | | |||||||||||| |||||| |||||||| |||| ||||    
T  2411379 ctcagttggtaggacaatgtattattatatgcaggggccggagttcgaaccccagacaccccacttattcatcttatatggtgaattctagcaatta 2411283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 18872531 - 18872583
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc 479  Q
    ||||||||||||||| |||| ||||||||| |||||||||| |||||||||||    
T  18872531 ctcagttggtaggacaatgcattattatatgcaggggtcggggttcgaacccc 18872583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 518
Target Start/End: Complemental strand, 1244810 - 1244719
Alignment:
Q  430 cagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||| | || ||||||||| |||||||| | |||||||||||  | |||| ||||||||| ||||||||||||||| ||||||    
T  1244810 cagttggtaggacaaagcattattatatgcaggggtcagggttcgaaccccagacaccccacttattcaccttataaggtgaattctagcca 1244719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 526
Target Start/End: Complemental strand, 20945978 - 20945875
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagccattag 522  Q
    |||||| |||||||||| |||| ||||||||| |||||| ||| |||||||  ||  | |||| ||||||||| ||||||||||||||| |||||| |||    
T  20945978 aactcaattggtaggacaatgcattattatatgcaggggccggggttcgaaatccggacaccccacttattcaccttataaggtgaattctagccactag 20945879  T
Q  523 atta 526  Q
    ||||    
T  20945878 atta 20945875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 518
Target Start/End: Original strand, 10508649 - 10508683
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagcca 518  Q
    |||||||||||| ||||||||||||||||||||||    
T  10508649 cccacttattcaccttataaggtgaattttagcca 10508683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 479
Target Start/End: Complemental strand, 973058 - 973009
Alignment:
Q  431 agttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc 479  Q
    |||||||||||| |||| |||||||||||||||| ||| |||||||||||    
T  973058 agttggtaggacaatgcattattatatacaggggccggggttcgaacccc 973009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 526
Target Start/End: Complemental strand, 6671810 - 6671770
Alignment:
Q  486 cacttattcaacttataaggtgaattttagccattagatta 526  Q
    |||||||||| ||||||||||||||| |||||| |||||||    
T  6671810 cacttattcatcttataaggtgaattctagccactagatta 6671770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 518
Target Start/End: Complemental strand, 7234956 - 7234864
Alignment:
Q  429 tcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagcca 518  Q
    ||||| |||||||| |||| |||||||||  || |||||| |||||||||||  |||||| | ||||||| ||||||||||||||| ||||||    
T  7234956 tcagtcggtaggacaatgcattattatatgtagaggtcggggttcgaaccccagataccccatttattcaccttataaggtgaattctagcca 7234864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 518
Target Start/End: Complemental strand, 7645126 - 7645094
Alignment:
Q  486 cacttattcaacttataaggtgaattttagcca 518  Q
    |||||||||| ||||||||||||||||||||||    
T  7645126 cacttattcaccttataaggtgaattttagcca 7645094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 38020033 - 38019939
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccatac---ccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| |||||| ||||||||||| ||||| ||   ||||||||||| ||||||| ||||||| ||||||    
T  38020033 ctcagttggtaggacaatgcattattatatgcaggggccggagttcgaaaccccagacaccccacttattcaccttataaagtgaattctagcca 38019939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 518
Target Start/End: Complemental strand, 15774399 - 15774304
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||||| |||| |||||||||  ||||||||| |||||||||||  | | |||||||||||| ||||||||||||||| ||||||    
T  15774399 aactcagttggtaggacaatgcattattatatgtaggggtcggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 15774304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 511
Target Start/End: Original strand, 19793534 - 19793622
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||||||||| |||| ||||||||| |||||| |||| ||||||||||  | | |||||||||||| |||||||||||||||    
T  19793534 aactcagttggtaggacaatgcattattatatgcaggggccggaattcgaaccccggacaccccacttattcaccttataaggtgaatt 19793622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 511
Target Start/End: Complemental strand, 49251482 - 49251394
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||||||||| |||| ||||||||| |||||||||| |||||||||||  | | |||||||||||| ||||||| |||||||    
T  49251482 aactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcaccttataatgtgaatt 49251394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 529
Target Start/End: Complemental strand, 4429567 - 4429463
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccatac---ccacttattcaacttataaggtgaattttagccattaga 523  Q
    ||||||||||||||| |||| ||||||||| ||||||| || ||||||||||  | ||   ||||||||||| ||||||||||||||| |||||| ||||    
T  4429567 ctcagttggtaggacaatgcattattatatgcaggggttggggttcgaaccctga-acattccacttattcatcttataaggtgaattctagccactaga 4429469  T
Q  524 ttatct 529  Q
     |||||    
T  4429468 ctatct 4429463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 518
Target Start/End: Original strand, 15368815 - 15368908
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||  | | ||||||||||||  |||||||||||||| ||||||    
T  15368815 ctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcattttataaggtgaattctagcca 15368908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 523
Target Start/End: Complemental strand, 23345140 - 23345044
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccatac-ccacttattcaacttataaggtgaattttagccattaga 523  Q
    ||||||||||||||| |||| || |||||| |||||| ||| |||||||| || | || ||||||||||| ||||||||||||||| |||||| ||||    
T  23345140 ctcagttggtaggacaatgcattgttatatgcaggggccgg-gttcgaactccaacactccacttattcaccttataaggtgaattctagccactaga 23345044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 511
Target Start/End: Complemental strand, 538413 - 538328
Alignment:
Q  429 tcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccca--tacccacttattcaacttataaggtgaatt 511  Q
    ||||||||||| || |||| ||||||||| |||||| ||||||||||||||| |    |||||||||||| |||||||| ||||||    
T  538413 tcagttggtagaacaatgcattattatatgcaggggccggagttcgaaccccgaacaccccacttattcaccttataagatgaatt 538328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 522
Target Start/End: Complemental strand, 749673 - 749575
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccataccc-acttattcaacttataaggtgaattttagccattag 522  Q
    |||||||||||| | || |||| |||||||||  |||||| || ||||||||||| | |||| ||||||||| |||||||| |||||| ||||| ||||    
T  749673 aactcagttggtcgaacaatgcattattatatgtaggggttggggttcgaaccccgacaccccacttattcaccttataagatgaattctagccgttag 749575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 511
Target Start/End: Original strand, 37733765 - 37733851
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||||||| |||| ||||||||| ||| || ||| |||||||||||  | | |||||||||||| |||||||||||||||    
T  37733765 ctcagttggtaggacaatgcattattatatgcagtggacggggttcgaaccccggacaccccacttattcaccttataaggtgaatt 37733851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 518
Target Start/End: Original strand, 11405490 - 11405559
Alignment:
Q  451 ttatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    |||||| |||||||||| |||||||||||  | | |||||||||||| ||||||||||||||| ||||||    
T  11405490 ttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttataaggtgaattctagcca 11405559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 32711170 - 32711125
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccattagattatct 529  Q
    |||||||||||| ||||||||||||||| |||||| |||| |||||    
T  32711170 cccacttattcaccttataaggtgaattctagccactagactatct 32711125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 477
Target Start/End: Original strand, 43237772 - 43237833
Alignment:
Q  417 cgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacc 477  Q
    |||||||  ||||||| ||||||||| |||| ||||||||| |||||||| |||||||||||    
T  43237772 cgtgagtataactcagctggtaggacaatgcattattatatgcaggggtcagagttcgaacc 43237833  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 475
Target Start/End: Complemental strand, 9408699 - 9408651
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaa 475  Q
    ||||||||||||||| |||| |||||| || ||||||||||||||||||    
T  9408699 ctcagttggtaggacaatgcattattaaatgcaggggtcggagttcgaa 9408651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 526
Target Start/End: Complemental strand, 35840133 - 35840093
Alignment:
Q  486 cacttattcaacttataaggtgaattttagccattagatta 526  Q
    |||||||||| ||||||||||||||| || |||||||||||    
T  35840133 cacttattcatcttataaggtgaattataaccattagatta 35840093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 511
Target Start/End: Complemental strand, 1033059 - 1032960
Alignment:
Q  414 tcccgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||  | |||||||||| |||| |||| ||||||||| |||||||||||||||||||||  | | |||||||||||| |||||||| ||||||    
T  1033059 tcccgtgagtctagctcagttggtgggacaatgcattattatatgcaggggtcggagttcgaacccgaacaccccacttattcaccttataagatgaatt 1032960  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 522
Target Start/End: Original strand, 9524967 - 9525064
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagccattag 522  Q
    ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||  | |||| ||||||||| ||||||||||||||| ||||| ||||    
T  9524967 ctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccagacaccctacttattcaccttataaggtgaattctagccgttag 9525064  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 522
Target Start/End: Complemental strand, 24608568 - 24608471
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccc-ataccc-acttattcaacttataaggtgaattttagccattag 522  Q
    ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||  | |||| ||||||||| ||||||||||||||| ||||| ||||    
T  24608568 ctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccagacaccctacttattcaccttataaggtgaattctagccgttag 24608471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 529
Target Start/End: Complemental strand, 44361018 - 44360918
Alignment:
Q  429 tcagttggtaggaccatgcttattatatacaggggtcggagttcgaacccccata--cccacttattcaacttataaggtgaattttagccattagatta 526  Q
    |||||||||||||| ||||  ||||||| ||||||| || ||||||||||| ||   ||||||||| || ||||||||||||||| |||||| |||| ||    
T  44361018 tcagttggtaggacaatgc--attatatgcaggggttggggttcgaaccccgatcatcccacttatccaccttataaggtgaattctagccactagacta 44360921  T
Q  527 tct 529  Q
    |||    
T  44360920 tct 44360918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 516
Target Start/End: Complemental strand, 10199838 - 10199736
Alignment:
Q  417 cgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccata--cccacttattcaacttataaggtgaatttt 513  Q
    |||||||  ||||||||| ||||||| |||| ||||||||| |||||| ||| ||||||||||| |    |||||||||||| ||||||||||||||| |    
T  10199838 cgtgagtctaactcagttagtaggacaatgcattattatatgcaggggccggggttcgaaccccaaacaccccacttattcaccttataaggtgaattct 10199739  T
Q  514 agc 516  Q
    |||    
T  10199738 agc 10199736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 511
Target Start/End: Complemental strand, 15042450 - 15042364
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||  | | |||||||||||| |||||||||||||||    
T  15042450 ctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcaccttataaggtgaatt 15042364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 17987534 - 17987441
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaattttagcca 518  Q
    ||||||||||||||  |||| ||||||||| |||||| |||||||||||||||  | | |||| ||||||| ||||||||||||||| ||||||    
T  17987534 ctcagttggtaggataatgcattattatatgcaggggccggagttcgaaccccggacaccccaattattcaccttataaggtgaattatagcca 17987441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 426 - 523
Target Start/End: Original strand, 27822078 - 27822178
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccata--cccacttattcaacttataaggtgaattttagccattag 522  Q
    ||||||||||||||||  |||| ||||||||| |||||||| |  || ||||||| |    |||||||||||| ||||||||| ||||||||||||||||    
T  27822078 aactcagttggtaggataatgcattattatatgcaggggtccggatttgaaccccaaacaccccacttattcaccttataaggagaattttagccattag 27822177  T
Q  523 a 523  Q
    |    
T  27822178 a 27822178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 523
Target Start/End: Complemental strand, 4798640 - 4798528
Alignment:
Q  414 tcccgtgagttcaactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaat 510  Q
    ||||||||||  | ||||||||||||||  |||| ||||||||| |||||| ||| |||||||||||  | | |||||||||||| ||| ||||||||||    
T  4798640 tcccgtgagtatagctcagttggtaggataatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcaccttgtaaggtgaat 4798541  T
Q  511 tttagccattaga 523  Q
    | |||||| ||||    
T  4798540 tctagccactaga 4798528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 521
Target Start/End: Complemental strand, 3379674 - 3379637
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccatta 521  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  3379674 cccacttattcaccttataaggtgaattctagccatta 3379637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 519
Target Start/End: Complemental strand, 30942686 - 30942590
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaaccccca--tacccacttattcaacttataaggtgaattttagccat 519  Q
    |||||| ||| |||||| |||| ||||||||| |||||| ||| ||||||||||| |    |||||||||| | ||||||||||||||| |||||||    
T  30942686 aactcaattgataggacaatgcattattatatgcaggggccggggttcgaaccccgaacaccccacttatttaccttataaggtgaattatagccat 30942590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 523
Target Start/End: Complemental strand, 36359782 - 36359705
Alignment:
Q  448 ttattatatacaggggtcggagttcgaa-cccccata-cccacttattcaacttataaggtgaattttagccattaga 523  Q
    ||||||||| |||||| ||||||||||| |||  | | |||||||||||| ||||||||||||||| |||||| ||||    
T  36359782 ttattatatgcaggggccggagttcgaatcccggacaccccacttattcaccttataaggtgaattctagccactaga 36359705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 8682391 - 8682443
Alignment:
Q  428 ctcagttggtaggaccatgctt-attatatacaggggtcggagttcgaacccc 479  Q
    ||||||||||||||| || ||| ||||||| ||||||| ||||||||||||||    
T  8682391 ctcagttggtaggacaattctttattatatgcaggggttggagttcgaacccc 8682443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 511
Target Start/End: Complemental strand, 25139951 - 25139886
Alignment:
Q  448 ttattatatacaggggtcggagttcgaacccc---catacccacttattcaacttataaggtgaatt 511  Q
    ||||||||| |||||||||| |||||||||||   ||| |||||||||||| ||||||| |||||||    
T  25139951 ttattatatgcaggggtcggggttcgaaccccgaacat-cccacttattcatcttataatgtgaatt 25139886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 27558955 - 27558863
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccccataccc-acttattcaacttataaggtgaattttagcca 518  Q
    |||| |||||||||  |||| ||||||||| ||||||||||  |||||||||  | |||| ||||||||| ||||| ||||||||| ||||||    
T  27558955 ctcatttggtaggataatgcattattatatgcaggggtcgggattcgaacccagacaccccacttattcaccttattaggtgaattctagcca 27558863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 43847712 - 43847764
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc 479  Q
    ||||||||||||||| |||| ||||||||| |||||| ||| |||||||||||    
T  43847712 ctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacccc 43847764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 523
Target Start/End: Original strand, 101841 - 101939
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc---catacccacttattcaacttataaggtgaattttagccattaga 523  Q
    ||||| ||||||||  |||| ||||||||| |||||| ||| |||||||||||   ||| |||||||||||| ||||||||||||||| |||||| ||||    
T  101841 ctcagctggtaggataatgcattattatatgcaggggccggggttcgaaccccaaacat-cccacttattcaccttataaggtgaattctagccactaga 101939  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 523
Target Start/End: Original strand, 49889 - 49928
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccattaga 523  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  49889 cccacttattcaacttataaggtgaattctagccactaga 49928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 22466 - 22524
Alignment:
Q  459 aggggtcggagttcgaacccccat-acccacttattcaacttataaggtgaattttagc 516  Q
    ||||||| ||||||||||||| |  ||||||||||||| ||||||||||||||| ||||    
T  22466 aggggtcagagttcgaaccccgaacacccacttattcaccttataaggtgaattctagc 22524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1990 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1990
Description:

Target: scaffold1990; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 529
Target Start/End: Original strand, 963 - 1008
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccattagattatct 529  Q
    |||||||||||| ||||||||||||||| |||||| |||| |||||    
T  963 cccacttattcaccttataaggtgaattctagccactagaatatct 1008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 47343 - 47298
Alignment:
Q  484 cccacttattcaacttataaggtgaattttagccattagattatct 529  Q
    |||||||||||| ||||||||||||||| |||||| |||| |||||    
T  47343 cccacttattcaccttataaggtgaattctagccactagaatatct 47298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1086 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1086
Description:

Target: scaffold1086; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 511
Target Start/End: Original strand, 2496 - 2584
Alignment:
Q  426 aactcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc-cata-cccacttattcaacttataaggtgaatt 511  Q
    ||||||||||||||||| |||| ||||||||| ||| ||| | |||| |||||||  | | |||||||||||| |||||||||||||||    
T  2496 aactcagttggtaggacaatgcattattatatgcagaggttgaagtttgaaccccggacaccccacttattcaccttataaggtgaatt 2584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 16857 - 16908
Alignment:
Q  428 ctcagttggtaggaccatgc-ttattatatacaggggtcggagttcgaacccc 479  Q
    ||||||||||||||| |||| ||||||||| |||||||||| |||||||||||    
T  16857 ctcagttggtaggacaatgcattattatatgcaggggtcgg-gttcgaacccc 16908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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