View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0600-Insertion-3 (Length: 516)

Name: NF0600-Insertion-3
Description: NF0600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0600-Insertion-3
NF0600-Insertion-3
[»] chr8 (18 HSPs)
chr8 (317-516)||(39861510-39861713)
chr8 (332-482)||(36731977-36732131)
chr8 (325-482)||(25128588-25128749)
chr8 (350-478)||(5882308-5882437)
chr8 (350-478)||(17450556-17450684)
chr8 (376-482)||(25191402-25191509)
chr8 (389-478)||(25129263-25129353)
chr8 (389-478)||(5881201-5881291)
chr8 (326-480)||(29266165-29266323)
chr8 (355-478)||(36731375-36731497)
chr8 (388-482)||(37437963-37438058)
chr8 (350-410)||(39130994-39131054)
chr8 (388-480)||(29361882-29361975)
chr8 (350-478)||(39860991-39861119)
chr8 (330-480)||(5332068-5332222)
chr8 (325-469)||(42987383-42987530)
chr8 (330-480)||(5330901-5331055)
chr8 (325-471)||(42986648-42986798)
[»] chr1 (35 HSPs)
chr1 (325-482)||(21790752-21790913)
chr1 (325-482)||(29858924-29859079)
chr1 (350-478)||(47052374-47052503)
chr1 (350-482)||(44233237-44233370)
chr1 (317-482)||(16960020-16960188)
chr1 (317-482)||(46284748-46284917)
chr1 (317-478)||(27651326-27651490)
chr1 (325-476)||(14886154-14886309)
chr1 (325-478)||(14886726-14886883)
chr1 (350-478)||(48302089-48302218)
chr1 (317-480)||(42986750-42986917)
chr1 (354-476)||(26897033-26897156)
chr1 (325-480)||(2271229-2271388)
chr1 (359-478)||(6690339-6690459)
chr1 (350-478)||(27651998-27652126)
chr1 (325-484)||(46285437-46285600)
chr1 (354-484)||(6690982-6691112)
chr1 (325-478)||(16959505-16959661)
chr1 (359-458)||(26896507-26896607)
chr1 (361-478)||(29859561-29859679)
chr1 (317-478)||(21791380-21791543)
chr1 (367-475)||(48301913-48302022)
chr1 (325-480)||(39848772-39848931)
chr1 (325-480)||(39847810-39847968)
chr1 (325-480)||(47374738-47374897)
chr1 (376-482)||(44234556-44234663)
chr1 (317-482)||(26212912-26213081)
chr1 (350-475)||(42986982-42987108)
chr1 (354-474)||(10716705-10716826)
chr1 (325-474)||(7011966-7012119)
chr1 (325-478)||(5216563-5216718)
chr1 (388-480)||(47374112-47374205)
chr1 (325-480)||(7012930-7013089)
chr1 (487-516)||(21790949-21790978)
chr1 (487-516)||(29859115-29859144)
[»] chr6 (9 HSPs)
chr6 (317-482)||(19653757-19653926)
chr6 (317-478)||(8993481-8993646)
chr6 (317-478)||(9017928-9018093)
chr6 (325-476)||(8992909-8993064)
chr6 (325-476)||(9017356-9017511)
chr6 (325-478)||(18649796-18649952)
chr6 (325-428)||(19651073-19651179)
chr6 (320-428)||(9280840-9280951)
chr6 (325-478)||(32907429-32907584)
[»] chr2 (22 HSPs)
chr2 (130-322)||(4446370-4446564)
chr2 (317-482)||(19386289-19386457)
chr2 (330-482)||(121311-121467)
chr2 (325-478)||(122851-123008)
chr2 (317-478)||(20202644-20202808)
chr2 (317-478)||(8911160-8911323)
chr2 (325-478)||(8911734-8911890)
chr2 (325-478)||(4776249-4776406)
chr2 (350-478)||(19386816-19386944)
chr2 (325-480)||(39629409-39629568)
chr2 (352-478)||(20203197-20203323)
chr2 (359-482)||(44929021-44929145)
chr2 (366-478)||(38956050-38956162)
chr2 (317-480)||(42848711-42848878)
chr2 (325-480)||(42849393-42849552)
chr2 (325-471)||(44926643-44926794)
chr2 (315-480)||(13327736-13327905)
chr2 (388-480)||(39628805-39628898)
chr2 (330-480)||(13328706-13328860)
chr2 (398-479)||(4776905-4776987)
chr2 (325-482)||(38273553-38273714)
chr2 (388-480)||(2477851-2477944)
[»] chr3 (22 HSPs)
chr3 (325-478)||(41710093-41710250)
chr3 (325-482)||(51827564-51827725)
chr3 (354-476)||(41709553-41709676)
chr3 (330-482)||(28907893-28908048)
chr3 (350-478)||(51829382-51829511)
chr3 (325-478)||(53948662-53948818)
chr3 (325-478)||(53949211-53949367)
chr3 (325-478)||(30834328-30834485)
chr3 (319-478)||(28908547-28908710)
chr3 (350-428)||(43400716-43400794)
chr3 (322-441)||(53948506-53948629)
chr3 (325-478)||(38798254-38798410)
chr3 (353-480)||(53949371-53949499)
chr3 (317-482)||(11238510-11238677)
chr3 (325-480)||(47169052-47169211)
chr3 (325-480)||(47167889-47168048)
chr3 (325-480)||(53949972-53950131)
chr3 (397-482)||(30833747-30833832)
chr3 (317-475)||(24485855-24486007)
chr3 (325-414)||(20200570-20200662)
chr3 (325-414)||(20202754-20202846)
chr3 (328-384)||(30833686-30833745)
[»] chr7 (26 HSPs)
chr7 (325-476)||(26774573-26774724)
chr7 (317-482)||(43334620-43334788)
chr7 (350-478)||(3474932-3475061)
chr7 (317-482)||(3163391-3163559)
chr7 (325-478)||(26773996-26774153)
chr7 (350-482)||(30469994-30470126)
chr7 (325-476)||(3475469-3475624)
chr7 (350-478)||(37422589-37422717)
chr7 (325-478)||(3162871-3163027)
chr7 (325-478)||(43334132-43334288)
chr7 (325-482)||(46428012-46428172)
chr7 (317-471)||(30469506-30469663)
chr7 (325-478)||(30659857-30660013)
chr7 (325-480)||(8487703-8487862)
chr7 (350-480)||(21866278-21866409)
chr7 (350-478)||(30660406-30660534)
chr7 (317-480)||(8487023-8487190)
chr7 (317-480)||(8512698-8512865)
chr7 (325-480)||(8513358-8513517)
chr7 (354-468)||(38816720-38816835)
chr7 (317-480)||(25245556-25245724)
chr7 (325-480)||(31178642-31178800)
chr7 (325-480)||(38059849-38060008)
chr7 (388-480)||(28451192-28451285)
chr7 (405-480)||(21865651-21865727)
chr7 (377-471)||(46427550-46427644)
[»] chr5 (9 HSPs)
chr5 (330-482)||(42519647-42519803)
chr5 (325-478)||(42520328-42520485)
chr5 (317-480)||(42521586-42521753)
chr5 (317-480)||(21147992-21148159)
chr5 (325-480)||(23206089-23206248)
chr5 (325-480)||(42520619-42520778)
chr5 (325-480)||(21145938-21146097)
chr5 (405-475)||(31218780-31218851)
chr5 (430-480)||(31219884-31219934)
[»] chr4 (17 HSPs)
chr4 (317-478)||(21824551-21824715)
chr4 (325-482)||(21825041-21825201)
chr4 (325-480)||(42882750-42882909)
chr4 (376-482)||(42883361-42883468)
chr4 (325-480)||(45919513-45919672)
chr4 (353-480)||(45920182-45920310)
chr4 (325-480)||(46619522-46619681)
chr4 (350-480)||(46618380-46618511)
chr4 (350-480)||(42058516-42058645)
chr4 (325-480)||(41695386-41695545)
chr4 (325-480)||(41696015-41696174)
chr4 (325-482)||(4158504-4158665)
chr4 (330-429)||(31915171-31915272)
chr4 (388-480)||(29212062-29212155)
chr4 (448-482)||(4157900-4157934)
chr4 (354-482)||(24377843-24377971)
chr4 (328-384)||(52362743-52362802)
[»] scaffold0155 (2 HSPs)
scaffold0155 (359-482)||(1674-1798)
scaffold0155 (317-478)||(992-1154)
[»] scaffold0009 (2 HSPs)
scaffold0009 (317-480)||(105504-105671)
scaffold0009 (325-480)||(106184-106343)
[»] scaffold0301 (1 HSPs)
scaffold0301 (317-480)||(20724-20889)
[»] scaffold0188 (1 HSPs)
scaffold0188 (325-480)||(25616-25775)
[»] scaffold0853 (2 HSPs)
scaffold0853 (317-480)||(609-771)
scaffold0853 (388-480)||(2219-2312)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 317 - 516
Target Start/End: Complemental strand, 39861713 - 39861510
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  39861713 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttaacatcaaatcctaaccattaatccaactttaatctaacgtctctcatcaattc 39861614  T
Q  414 attaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctctggcgccaatgattgccatttgatttctccc 512  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  39861613 attaaattctcacgtgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttgcaccaatgattgccatttgatttctccc 39861514  T
Q  513 acta 516  Q
    ||||    
T  39861513 acta 39861510  T

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Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 332 - 482
Target Start/End: Complemental strand, 36732131 - 36731977
Alignment:
Q  332 tcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat 428  Q
    ||||||||||| |||||||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36732131 tcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat 36732032  T
Q  429 -attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
      ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36732031 gcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctct 36731977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 325 - 482
Target Start/End: Original strand, 25128588 - 25128749
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||     
T  25128588 gataagatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaata 25128687  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
     ||| ||| ||||||| ||||  ||||||||||||||| ||||||  |||||||||||||||    
T  25128688 ttcaaatacttgatcatatgatgcaaattttaattttagaaataaaatattctttcttctct 25128749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 350 - 478
Target Start/End: Complemental strand, 5882437 - 5882308
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaat 448  Q
    ||||||||||||||  ||||| ||| |||||||||||| ||||||   |||  |||||||||||||||||| |||||||  |||||||||||| ||||||    
T  5882437 aattaaatttgacacaaaatcctaaccattaatccaacattaatccgccgttgctcatcaattcattaaatgctcacatgcttgatcaaatgatccaaat 5882338  T
Q  449 tttaattttaaaaataatttattctttctt 478  Q
    ||||||||||||||||||||||||||||||    
T  5882337 tttaattttaaaaataatttattctttctt 5882308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 350 - 478
Target Start/End: Original strand, 17450556 - 17450684
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 449  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||||||||| |||||||  | ||||||| | | || ||    
T  17450556 aattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcacatgcttatcaaattatctaattt 17450655  T
Q  450 ttaattttaaaaataatttattctttctt 478  Q
    ||||||||| ||| |||||||||||||||    
T  17450656 ttaattttagaaacaatttattctttctt 17450684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 376 - 482
Target Start/End: Complemental strand, 25191509 - 25191402
Alignment:
Q  376 cattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctt 474  Q
    |||||||||||||||||||  ||||| |||||||||||| |||||  ||||||  |||||||| |||  ||||||||||||||| |||||||||||||||    
T  25191509 cattaatccaactttaatccgacgtccctcatcaattcagtaaatgttcacatgcttgatcaactgattcaaattttaattttagaaataatttattctt 25191410  T
Q  475 tcttctct 482  Q
    ||||||||    
T  25191409 tcttctct 25191402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 25129353 - 25129263
Alignment:
Q  389 ttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||| ||||||||||||||||||||||||| ||||||| || ||| |||||| |||||||||||||||| |||||||||||| ||||||    
T  25129353 ttaatccaacgtctctcatcaattcattaaatgctcacatgtttgatgaaatgatccaaattttaattttagaaataatttattatttctt 25129263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 5881201 - 5881291
Alignment:
Q  389 ttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||| ||||||||||||||||||||||||| |||||||  ||||| |||||| ||||| |||||||||| ||||||| |||||||||||    
T  5881201 ttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatgaaatgatccaaactttaattttagaaataatgtattctttctt 5881291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 480
Target Start/End: Original strand, 29266165 - 29266323
Alignment:
Q  326 atatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattc 422  Q
    |||| |||||||||||| |||||||  ||||||||||||||||||||| |||  |||||| | | |||||||||||| ||| ||| || ||||||| |      
T  29266165 atataatcaaatgacaccaaggtgtcaaattaaatttgacatcaaatcctaactattaatacgattttaatctaacggctcccataaactcattaagtat 29266264  T
Q  423 tcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    | ||||  |||||||||||| |||  ||||| ||||| |||||||||||||||||||||    
T  29266265 ttacatgcttgatcaaatgacccactttttatttttagaaataatttattctttcttct 29266323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 355 - 478
Target Start/End: Original strand, 36731375 - 36731497
Alignment:
Q  355 aatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaattttaat 454  Q
    ||||||||| |||||| ||| ||||||| |||| ||||||  ||||||| ||||||||||||||||  ||| ||  |  |||||| | ||||| ||||||    
T  36731375 aatttgacaccaaatcttaaccattaattcaaccttaatccgacgtctcccatcaattcattaaatgttcatatgct-ttcaaataatccaaaatttaat 36731473  T
Q  455 tttaaaaataatttattctttctt 478  Q
    ||||||||||||||||||||||||    
T  36731474 tttaaaaataatttattctttctt 36731497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 388 - 482
Target Start/End: Original strand, 37437963 - 37438058
Alignment:
Q  388 tttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    |||||||||||| ||| ||||||||||||| || |||||||||| |||||||| | |||  ||||||||||| |||||||||||||||| ||||||    
T  37437963 tttaatctaacggctcccatcaattcattagatgctcacatatttgatcaaattatccatcttttaattttagaaataatttattcttttttctct 37438058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 410
Target Start/End: Complemental strand, 39131054 - 39130994
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaa 410  Q
    |||||||||||||| |||||||||| |||||||| ||||||||||  ||||||||||||||    
T  39131054 aattaaatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaa 39130994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 480
Target Start/End: Original strand, 29361882 - 29361975
Alignment:
Q  388 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||||||| ||| |||||||||||||| | || ||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  29361882 tttaatctaacggctcccatcaattcattaagtgctaacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 29361975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 478
Target Start/End: Original strand, 39860991 - 39861119
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaact-ttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaat 448  Q
    |||| ||||||| || ||||| ||| ||||||| ||||  ||||||  ||||||| |||||||||||||||| |||||||  |  |||||| | |||||     
T  39860991 aatttaatttgatattaaatcttaaccattaattcaaccattaatccgacgtctcccatcaattcattaaatgctcacatgctt-tcaaataatccaaaa 39861089  T
Q  449 tttaattttaaaaataatttattctttctt 478  Q
    ||||||||||  ||||||||||||||||||    
T  39861090 tttaattttagtaataatttattctttctt 39861119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 480
Target Start/End: Complemental strand, 5332222 - 5332068
Alignment:
Q  330 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 426  Q
    ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || |||||||   |||||    
T  5332222 gatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagagctcac 5332123  T
Q  427 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||  |||||||| |||  ||  ||||| ||||| |||||||||||||||||||||    
T  5332122 atgcttgatcaagtgactcaccttttatttttagaaataatttattctttcttct 5332068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 469
Target Start/End: Complemental strand, 42987530 - 42987383
Alignment:
Q  325 gatatgatcaaatgacacaaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattc 422  Q
    |||| |||||||||||||  |||||  ||||||| |||||| |||||| |||  ||||||  |  |||||||||| |  || |||||||||||||| | |    
T  42987530 gataagatcaaatgacaccgggtgtcaaattaaacttgacaccaaatcctaactattaatatagttttaatctaaaggttcacatcaattcattaagtgc 42987431  T
Q  423 tcacata-ttgatcaaatgagccaaattttaattttaaaaataattta 469  Q
    ||| ||  |||||||| ||| |||  ||||||||||||||||||||||    
T  42987430 tcatatgcttgatcaagtgacccaccttttaattttaaaaataattta 42987383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 480
Target Start/End: Original strand, 5330901 - 5331055
Alignment:
Q  330 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 426  Q
    ||||||||||||| |||||||  |||||||||||||| |||||  ||  ||||||| |   |||||||||||| ||| ||| || ||||||| | |||||    
T  5330901 gatcaaatgacaccaaggtgttaaattaaatttgacaccaaattctagccattaatacggttttaatctaacggctcccataaactcattaagtgctcac 5331000  T
Q  427 at-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||  |||||||| ||| |||  ||||| ||||| ||||||||||  |||||||||    
T  5331001 atgcttgatcaagtgacccaccttttatttttagaaataatttaaactttcttct 5331055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 471
Target Start/End: Original strand, 42986648 - 42986798
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| || ||||  |||||||||||||| |||||||||  |||||||     |||||| ||| | ||||||| |||||||||| |     
T  42986648 gataggatcaaatgacaccaaagtgtcaaattaaatttgacaccaaatcatagccattaataatgttttaatttaatggctctcattaattcattaagtg 42986747  T
Q  422 ctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttatt 471  Q
    ||| ||| || |||||| ||| |||  ||||||||||| ||||||||||||    
T  42986748 ctcgcatgtttgatcaagtgacccaccttttaattttataaataatttatt 42986798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 8e-56; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 325 - 482
Target Start/End: Original strand, 21790752 - 21790913
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21790752 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaatt 21790851  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    |||||||  ||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  21790852 ctcacatgcttgatcaaatgagccaaattttaattttagaaataattaattctttcttctct 21790913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 325 - 482
Target Start/End: Original strand, 29858924 - 29859079
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| ||| |||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  29858924 gataggatcaaatgacaccaagatgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatctaacgtctcgcatcaattcattaaatt 29859023  T
Q  422 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||||||     |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  29859024 ctcaca-----atcaaatgagtcaaattttaattttagaaataatttattctttcttctct 29859079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 350 - 478
Target Start/End: Original strand, 47052374 - 47052503
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 448  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||| | ||||    
T  47052374 aattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaat 47052473  T
Q  449 tttaattttaaaaataatttattctttctt 478  Q
    |||||||||||||| |||||||||||||||    
T  47052474 tttaattttaaaaacaatttattctttctt 47052503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 350 - 482
Target Start/End: Original strand, 44233237 - 44233370
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 448  Q
    ||||||||||||||||||||  |||  ||||||||||||||||||| |||||||||||||||| ||||||| |||||||  |||||||||||| ||||||    
T  44233237 aattaaatttgacatcaaattctaacaattaatccaactttaatctgacgtctctcatcaatttattaaatgctcacatgcttgatcaaatgatccaaat 44233336  T
Q  449 tttaattttaaaaataatttattctttcttctct 482  Q
    ||||||||||||||||||||||| ||| ||||||    
T  44233337 tttaattttaaaaataatttattatttattctct 44233370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 317 - 482
Target Start/End: Complemental strand, 16960188 - 16960020
Alignment:
Q  317 atatatgagatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| |||||||||||| || |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| ||||||||||    
T  16960188 atatatgggataggatcaaatgacatcatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctatcatcaattc 16960089  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||||||| |||||||  |||||||||| | |||||||||||||||| ||| ||||| |||||||||||||    
T  16960088 attaaatgctcacatgcttgatcaaattatccaaattttaattttagaaacaattt-ttctttcttctct 16960020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 317 - 482
Target Start/End: Original strand, 46284748 - 46284917
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| || ||||  ||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||| ||||||    
T  46284748 atatatgggataggatcaaatgacaccaaagtgtcaaattaaatttgacatcaaatcctaaccattaatccaactttaatccgacgtctctcaacaattc 46284847  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||||||| || ||||  ||||||||||||  ||||||||||||||| ||||||  |||||||||||||||    
T  46284848 attaaatgcttacatgcttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttctct 46284917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 317 - 478
Target Start/End: Original strand, 27651326 - 27651490
Alignment:
Q  317 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||||||||||||||||| | |||||  ||||||||||||||  ||||||||| ||||||| |||||||||||  |||||||||||||||||    
T  27651326 atatatgggatatgatcaaatgacaccatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccgacgtctctcatcaattc 27651425  T
Q  414 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    ||||||| |||||||| | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  27651426 attaaatgctcacatacttatcaaattatctaatttttaattttagaaacaatttattctttctt 27651490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 325 - 476
Target Start/End: Original strand, 14886154 - 14886309
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  ||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||     
T  14886154 gataggatcaaatgacaccatggtgtcaaatcaaatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatg 14886253  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 476  Q
    |||||||  |||||||||| | | |||||||||||||| ||| |||||||||||||    
T  14886254 ctcacatgcttgatcaaattatctaaattttaattttagaaacaatttattctttc 14886309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 325 - 478
Target Start/End: Complemental strand, 14886883 - 14886726
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||     
T  14886883 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatg 14886784  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
     ||||||  |||| ||||||| | |||||||||||||| ||| |||||||||||||||    
T  14886783 ttcacatgcttgagcaaatgatctaaattttaattttagaaacaatttattctttctt 14886726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 350 - 478
Target Start/End: Complemental strand, 48302218 - 48302089
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 448  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||  |||||||||| | | | ||    
T  48302218 aattaaatttgacaccaaaccataaccattaatccaactttaatctcacgtctctcatcaattcattaaatgctcacatgtttgatcaaattatctacat 48302119  T
Q  449 tttaattttaaaaataatttattctttctt 478  Q
    |||||||||| ||| |||||||||||||||    
T  48302118 tttaattttagaaacaatttattctttctt 48302089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 317 - 480
Target Start/End: Original strand, 42986750 - 42986917
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgtaa--ttaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    |||||||||||||||||||||||||| ||| |||||  |||||||||||| |||||| || |||||||| |   |||||||||| | ||||||| |||||    
T  42986750 atatatgagatatgatcaaatgacaccaagatgtaaaattaaatttgacaccaaatcttagtcattaatactcatttaatctaatggctctcattaattc 42986849  T
Q  414 attaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||||| | ||||||| || |||||||||| |||  |||||||||||||||||||||||||||||||||    
T  42986850 attaagtgctcacatgtttgatcaaatgatccaccttttaattttaaaaataatttattctttcttct 42986917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 354 - 476
Target Start/End: Complemental strand, 26897156 - 26897033
Alignment:
Q  354 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 452  Q
    |||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||  |||||||||| | | ||||||||    
T  26897156 aaatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatactcatatgcttgatcaaattatctaaatttta 26897057  T
Q  453 attttaaaaataatttattctttc 476  Q
    |||||| ||| |||||||||||||    
T  26897056 attttagaaacaatttattctttc 26897033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 2271388 - 2271229
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||||||||||||||||| || ||||  ||||||||||||||  ||||| ||| |||||||||||||||||||  ||||| ||||||||||||||| ||     
T  2271388 gatatgatcaaatgacaccaatgtgtcaaattaaatttgacactaaatcctaaccattaatccaactttaatccgacgtccctcatcaattcattagatg 2271289  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
     ||||||  |||||||||||| | ||| |||||||||| ||||||| |||||||||||||    
T  2271288 ttcacatgcttgatcaaatgatcaaaaatttaattttagaaataatgtattctttcttct 2271229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 359 - 478
Target Start/End: Original strand, 6690339 - 6690459
Alignment:
Q  359 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaatttt 457  Q
    |||||||||||| ||| |||||||||||||||||||  ||||  |||||||||| ||||||| |||||||  |||||||||||| |||||||||||||||    
T  6690339 tgacatcaaatcctaaccattaatccaactttaatccgacgttgctcatcaatttattaaatgctcacatgcttgatcaaatgatccaaattttaatttt 6690438  T
Q  458 aaaaataatttattctttctt 478  Q
    | |||||||||||| ||||||    
T  6690439 agaaataatttattatttctt 6690459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 350 - 478
Target Start/End: Complemental strand, 27652126 - 27651998
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 449  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||  |||| ||||||||||||||||||| |||||||  | ||||||| | | |||||    
T  27652126 aattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtttctcatcaattcattaaatgctcacatgcttatcaaattatctaaatt 27652027  T
Q  450 ttaattttaaaaataatttattctttctt 478  Q
    ||||||||| ||| ||||| |||||||||    
T  27652026 ttaattttagaaacaatttgttctttctt 27651998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 325 - 484
Target Start/End: Complemental strand, 46285600 - 46285437
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||||| | |||   ||||   |||||||||||||||||     
T  46285600 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatccaacgtaaattcgacgttgatcatcaattcattaaatg 46285501  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctctgg 484  Q
    |||| ||  |||||||||| | |||||||||||||||| ||||||||||||||||||| |||||    
T  46285500 ctcaaatgcttgatcaaattatccaaattttaattttagaaataatttattctttcttttctgg 46285437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 354 - 484
Target Start/End: Complemental strand, 6691112 - 6690982
Alignment:
Q  354 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 452  Q
    |||||||||| |||||||||| |||||||||||||||||||  | |||||||| ||||||||||||| |||||||  ||||||||||||  |||||||||    
T  6691112 aaatttgacaccaaatcataaccattaatccaactttaatccgatgtctctcaacaattcattaaatactcacatgtttgatcaaatgattcaaatttta 6691013  T
Q  453 attttaaaaataatttattctttcttctctgg 484  Q
    | |||| ||||||  |||||||||||||||||    
T  6691012 a-tttagaaataaaatattctttcttctctgg 6690982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 16959505 - 16959661
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| |||||||| |||| |||||||  ||||||||||||||  ||||| ||| |||||||||| ||||||||| |||||||||||||| |||||||||     
T  16959505 gataggatcaaataacaccaaggtgtcaaattaaatttgacactaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatg 16959603  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  |||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  16959604 ctcacatgtttgaacaaataatccaaattttaattttagaaataatttattccttctt 16959661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 359 - 458
Target Start/End: Original strand, 26896507 - 26896607
Alignment:
Q  359 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaatttt 457  Q
    ||||| ||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||| | |||||||||||||    
T  26896507 tgacaccaaatcataactattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaattttaatttt 26896606  T
Q  458 a 458  Q
    |    
T  26896607 a 26896607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 361 - 478
Target Start/End: Complemental strand, 29859679 - 29859561
Alignment:
Q  361 acatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatat-tgatcaaatgagccaaattttaattttaa 459  Q
    |||||||||  ||| |||| || || ||||||||  | ||||| |||||||||||||||| |||||||   |||||||||||| ||||||||||||||||    
T  29859679 acatcaaattttaaccattcattcatctttaatccgatgtctcccatcaattcattaaatgctcacatgcatgatcaaatgagacaaattttaattttaa 29859580  T
Q  460 aaataatttattctttctt 478  Q
    |||||||||||||||||||    
T  29859579 aaataatttattctttctt 29859561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 317 - 478
Target Start/End: Complemental strand, 21791543 - 21791380
Alignment:
Q  317 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||| ||| ||||||| |||| ||||||  ||||||| | |||||||    
T  21791543 atatatgggataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcttaaccattaattcaaccttaatccgacgtctcccgtcaattc 21791444  T
Q  414 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  ||||||  |  |||||| | ||||| |||||||||| |||||||||||||||||||    
T  21791443 attaaatgttcacatgct-ttcaaataatccaaaatttaattttagaaataatttattctttctt 21791380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 367 - 475
Target Start/End: Original strand, 48301913 - 48302022
Alignment:
Q  367 aatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataa 465  Q
    ||||||||||||||||  ||||||||||| | ||||||||||||||| |||||| |||||||  |||||||||||| | |||||||||||||| ||  ||    
T  48301913 aatcataatcattaattaaactttaatctgatgtctctcatcaattcgttaaatgctcacatgcttgatcaaatgatctaaattttaattttagaatcaa 48302012  T
Q  466 tttattcttt 475  Q
    ||||||||||    
T  48302013 tttattcttt 48302022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 39848931 - 39848772
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| ||  |||||||||||| ||||||| || ||||||| |     
T  39848931 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacagttttaatctaacggctctcataaactcattaagtg 39848832  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  39848831 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 39848772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 39847810 - 39847968
Alignment:
Q  325 gatatgatcaaatgacacaaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattc 422  Q
    |||| ||||||||||||| | ||||  |||||||||||||| |||||| || |||||||| |   |||||||||||| ||||||| || ||||||| |      
T  39847810 gataggatcaaatgacaccaagtgtcaaattaaatttgacaccaaatcctagtcattaatacggttttaatctaacggctctcataaactcattaagtgt 39847909  T
Q  423 tcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||||||  |||||||| ||| |||  ||||| |||||||||||||||||||||||||||    
T  39847910 tcacatgcttgatcaagtgacccaccttttatttttaaaaataatttattctttcttct 39847968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 47374897 - 47374738
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| |||| || |||||||||| |     
T  47374897 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatactgttttaatctaacggctcttattaattcattaagtg 47374798  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| |||  ||  ||||| ||||| |||||||||||||||||||||    
T  47374797 ctcacatgcttgatcaagtgacacatcttttatttttataaataatttattctttcttct 47374738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 482
Target Start/End: Complemental strand, 44234663 - 44234556
Alignment:
Q  376 cattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctt 474  Q
    |||||||||||||||||| | |||| | |||| |||| |||||||  |||||| || |||||||||| || ||||||||||||| |||||||||||| ||    
T  44234663 cattaatccaactttaatatgacgtttttcataaatttattaaatgatcacatgtttgatcaaatgatccgaattttaattttagaaataatttattatt 44234564  T
Q  475 tcttctct 482  Q
    | ||||||    
T  44234563 ttttctct 44234556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 482
Target Start/End: Original strand, 26212912 - 26213081
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| |||||||  ||| |||||||||| |||||| ||  |||||||  |  ||||||| |||| |||| |||||||     
T  26212912 atatatgggataggatcaaatgacactaaggtgtcaaataaaatttgacaccaaatcttatccattaatatagttttaatccaacggctctaatcaattt 26213011  T
Q  414 attaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
      ||| | |||||||||| ||| ||||||||||  ||||||||||| ||| ||| |||||||||||||||    
T  26213012 tataagtgctcacatatttgattaaatgagccaccttttaattttagaaacaatctattctttcttctct 26213081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 475
Target Start/End: Complemental strand, 42987108 - 42986982
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 448  Q
    ||||||||||||||||||||| ||| |||||||  |  |||||||||| |  || |||||||||||||| |  ||||||  |||||||| ||| |||  |    
T  42987108 aattaaatttgacatcaaatcctaaccattaatatagttttaatctaaaggttcacatcaattcattaagtgttcacatgcttgatcaagtgacccacct 42987009  T
Q  449 tttaattttaaaaataatttattcttt 475  Q
    |||||||||| ||||||||||||||||    
T  42987008 tttaattttagaaataatttattcttt 42986982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 474
Target Start/End: Original strand, 10716705 - 10716826
Alignment:
Q  354 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 452  Q
    |||||| ||| |||||  ||||||||||| | | |||||||||||| ||| |||||||||||||| | |||||||  |||||||| ||| |||  |||||    
T  10716705 aaatttaacaccaaattctaatcattaatacgattttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatctttta 10716804  T
Q  453 attttaaaaataatttattctt 474  Q
     ||||| |||||||||||||||    
T  10716805 tttttagaaataatttattctt 10716826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 474
Target Start/End: Original strand, 7011966 - 7012119
Alignment:
Q  325 gatatgatcaaatgacaca-aggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    ||||||||||||||||||  ||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  7011966 gatatgatcaaatgacaccgaggtgtcaaattaaatttgacaccaaatcctagccattaattcgggtttaatctaacggctcccataaactcattaagtg 7012065  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctt 474  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||    
T  7012066 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctt 7012119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 5216563 - 5216718
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  |||||||||||| | |||||| ||| ||||||| |||| ||||||  ||||||| | ||||||||||||||     
T  5216563 gataggatcaaatgacaccatggtgtcaaattaaatttgataccaaatcttaaccattaattcaaccttaatccgacgtctcccgtcaattcattaaatg 5216662  T
Q  422 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
     ||||||  |  |||||| |  |||| |||||||||| |||||||||||| ||||||    
T  5216663 ttcacatgct-ttcaaataattcaaaatttaattttagaaataatttattatttctt 5216718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 480
Target Start/End: Original strand, 47374112 - 47374205
Alignment:
Q  388 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||||||| ||  |||||||||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  47374112 tttaatctaacggcttccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 47374205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 7013089 - 7012930
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| |||  || || ||||| | |     
T  7013089 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctccgataaactcattgagtg 7012990  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  7012989 ctcacatgcttgatcaagtgacccactttttatttttagaaataatttattctttcttct 7012930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 516
Target Start/End: Original strand, 21790949 - 21790978
Alignment:
Q  487 ccaatgattgccatttgatttctcccacta 516  Q
    ||||||||||||||||||||||||||||||    
T  21790949 ccaatgattgccatttgatttctcccacta 21790978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 516
Target Start/End: Original strand, 29859115 - 29859144
Alignment:
Q  487 ccaatgattgccatttgatttctcccacta 516  Q
    ||||||||||||||||||||||||||||||    
T  29859115 ccaatgattgccatttgatttctcccacta 29859144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 317 - 482
Target Start/End: Complemental strand, 19653926 - 19653757
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  19653926 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatccaactttaatctgacgtctctcatcaattc 19653827  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||||||| |||| ||  || ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  19653826 attaaatgctcatatgtttaatcaaatgatccaaattttaattttagaaataatttattctttcttctct 19653757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 317 - 478
Target Start/End: Complemental strand, 8993646 - 8993481
Alignment:
Q  317 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||| ||||    
T  8993646 atatatgggataggatcaaatgacaccacggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatccattc 8993547  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
     |||||| |||||||  |||||||||||| | |||||||||||||| ||| |||||||||||||||    
T  8993546 tttaaatgctcacatgtttgatcaaatgatctaaattttaattttagaaacaatttattctttctt 8993481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 317 - 478
Target Start/End: Complemental strand, 9018093 - 9017928
Alignment:
Q  317 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||| ||||    
T  9018093 atatatgggataggatcaaatgacaccacggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatccattc 9017994  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
     |||||| |||||||  |||||||||||| | |||||||||||||| ||| |||||||||||||||    
T  9017993 tttaaatgctcacatgtttgatcaaatgatctaaattttaattttagaaacaatttattctttctt 9017928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 325 - 476
Target Start/End: Original strand, 8992909 - 8993064
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  ||||||||||||||  ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||     
T  8992909 gataggatcaaatgacaccatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaata 8993008  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 476  Q
    |||||||  |||||||||| | | |||||||||||||| ||| |||||||||||||    
T  8993009 ctcacatgcttgatcaaattatctaaattttaattttagaaacaatttattctttc 8993064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 325 - 476
Target Start/End: Original strand, 9017356 - 9017511
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  ||||||||||||||  ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||     
T  9017356 gataggatcaaatgacaccatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaata 9017455  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 476  Q
    |||||||  |||||||||| | | |||||||||||||| ||| |||||||||||||    
T  9017456 ctcacatgcttgatcaaattatctaaattttaattttagaaacaatttattctttc 9017511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 325 - 478
Target Start/End: Complemental strand, 18649952 - 18649796
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||||| |||     
T  18649952 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatg 18649853  T
Q  422 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  | | ||||| | | |||||||||||||| ||| |||||||||||||||    
T  18649852 ctcacatgcttaacaaattatctaaattttaattttagaaacaatttattctttctt 18649796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 325 - 428
Target Start/End: Original strand, 19651073 - 19651179
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||     
T  19651073 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaatcattaatccaactttaatctgacgtctctcattaattcattaaatg 19651172  T
Q  422 ctcacat 428  Q
    |||||||    
T  19651173 ctcacat 19651179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 9280951 - 9280840
Alignment:
Q  320 tatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcatt 416  Q
    |||| |||| ||||||||||||| || ||||  |||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||| |||    
T  9280951 tatgcgataggatcaaatgacaccaatgtgtcaaattaaatttgacaccaaatccaaatcattaatccaactttaatctaaagtctctcatcaatttatt 9280852  T
Q  417 aaattctcacat 428  Q
    ||||||||||||    
T  9280851 aaattctcacat 9280840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 32907429 - 32907584
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  |||| ||||||||| |||||| ||| ||||||| |||| ||||||| ||||||| |||||||||||||||      
T  32907429 gataggatcaaatgacaccatggtgtcaaatttaatttgacaccaaatcttaaccattaattcaaccttaatctgacgtctcccatcaattcattaaagg 32907528  T
Q  422 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  |  |||||| | ||||| |||||||||| |||||||||||||||||||    
T  32907529 ctcacatgct-ttcaaataatccaaaatttaattttagaaataatttattctttctt 32907584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 130 - 322
Target Start/End: Original strand, 4446370 - 4446564
Alignment:
Q  130 gtgcgctggatcagtggcatcccgtggatcatgttttatgtattcgcaaaaattgatgtccaa-ctcattgtttttggattgtataattcgaactaggtt 228  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| || |||||||||| |||||||||| |||| ||||||    
T  4446370 gtgcactggatcagtggcatcccgtggataatgttttatgtattcgcaaaaattgctgtgcaaactgattgtttttgaattgtataatccgaagtaggtt 4446469  T
Q  229 tcatattttaaaatctgaagagtatttttg-nnnnnnntagagcgcctgaaaaacacatagggtgtgaaaagtaagaattagtctattcatatat 322  Q
    |||||||||||||||| |||||||||||||        ||||||   ||| |||||| |||| ||||||||||||||||||| ||| ||||||||    
T  4446470 tcatattttaaaatctaaagagtatttttgaaaaaaaatagagcatgtgagaaacacgtaggatgtgaaaagtaagaattagcctactcatatat 4446564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 317 - 482
Target Start/End: Original strand, 19386289 - 19386457
Alignment:
Q  317 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||||||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||| ||| | ||||||||    
T  19386289 atatatgggatatgatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacatctattatcaattc 19386388  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||||||| |||||||  |||||||||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  19386389 attaaatgctcacatgcttgatcaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 19386457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 330 - 482
Target Start/End: Original strand, 121311 - 121467
Alignment:
Q  330 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 426  Q
    ||||||||||||| |||||||  ||||||||||||||  ||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| ||||     
T  121311 gatcaaatgacactaaggtgtcaaattaaatttgacactaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaa 121410  T
Q  427 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||| ||||||||||||  ||||||||||||||| ||||||  |||||||||||||||    
T  121411 atacttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttctct 121467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 325 - 478
Target Start/End: Complemental strand, 123008 - 122851
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||  ||| ||||||| |||| |||||| |||||||||||||||||||||||||     
T  123008 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaattctaaccattaattcaacattaatccaacgtctctcatcaattcattaaatg 122909  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||| ||||| |||||| ||||| |||||||||| ||||||| |||||||||||    
T  122908 ctcacatacttgatgaaatgatccaaactttaattttagaaataatgtattctttctt 122851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 317 - 478
Target Start/End: Original strand, 20202644 - 20202808
Alignment:
Q  317 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| |||||||||||||   |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||    
T  20202644 atatatgggataggatcaaatgacaccgtggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattc 20202743  T
Q  414 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    ||||||| |||||||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  20202744 attaaatgctcacatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 20202808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 317 - 478
Target Start/End: Original strand, 8911160 - 8911323
Alignment:
Q  317 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    |||||||||||| ||||||||||||| | |||||  ||||| |||||||| |||||||||| ||||||| |||||||||||  |||||||||||||| ||    
T  8911160 atatatgagataggatcaaatgacaccatggtgtcaaattatatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaa-tc 8911258  T
Q  414 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    ||||||| |||||||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  8911259 attaaatactcacatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 8911323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 478
Target Start/End: Complemental strand, 8911890 - 8911734
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||| |  ||||||||||||||||     
T  8911890 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgttttccatcaattcattaaatg 8911791  T
Q  422 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  | ||||||| | | |||||||||||||| ||| |||||||||||||||    
T  8911790 ctcacatgcttatcaaattatctaaattttaattttagaaacaatttattctttctt 8911734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 4776249 - 4776406
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||||||||||||||||| || ||||  ||||||||||||||  ||||| |||  ||||||||||| ||||||  ||||  ||||||||||||||||||     
T  4776249 gatatgatcaaatgacactaaagtgtcaaattaaatttgacactaaatcctaacaattaatccaacattaatccgacgttgctcatcaattcattaaatg 4776348  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  |||||||| ||| | |||||| ||||||| |||||||||||||||||||    
T  4776349 ctcacatgcttgatcaattgatcaaaatttcaattttagaaataatttattctttctt 4776406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 350 - 478
Target Start/End: Complemental strand, 19386944 - 19386816
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaat 448  Q
    ||||||||||||||  ||||| ||| |||||||||| ||||||||| |||||||||||||| ||||||||| |||| ||  |||| ||||| | ||||||    
T  19386944 aattaaatttgacactaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatgctcatatgcttgaacaaataatccaaat 19386846  T
Q  449 tttaattttaaaaataatttattctttctt 478  Q
    |||||||||| ||||||||||||| |||||    
T  19386845 tttaattttagaaataatttattccttctt 19386816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 39629568 - 39629409
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||  ||  ||||||| ||  |||||||||||| |||||||||||||||||| |     
T  39629568 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaattctagccattaatacagttttaatctaacggctctcatcaattcattaagtg 39629469  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  ||||| || ||| |||  ||||| ||||| |||||||||||||||||||||    
T  39629468 ctcacatgcttgattaagtgacccatcttttatttttagaaataatttattctttcttct 39629409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 352 - 478
Target Start/End: Complemental strand, 20203323 - 20203197
Alignment:
Q  352 ttaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatttt 451  Q
    |||||||||||| |||||||||| ||||||| |||||||||||  |||| | ||||||||||||| ||| |||||||  | | ||||| |   |||||||    
T  20203323 ttaaatttgacaccaaatcataaccattaattcaactttaatccgacgtttttcatcaattcattgaatgctcacatgcttaacaaattatataaatttt 20203224  T
Q  452 aattttaaaaataatttattctttctt 478  Q
    ||||||| ||| |||||||||||||||    
T  20203223 aattttagaaacaatttattctttctt 20203197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 359 - 482
Target Start/End: Complemental strand, 44929145 - 44929021
Alignment:
Q  359 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaatttt 457  Q
    |||||| ||||| ||  |||||||  || ||||||||||||    ||||||||||||||||| |||||||||| |||||||||| |||  ||||||||||    
T  44929145 tgacattaaatcctagccattaatataattttaatctaacggtgttcatcaattcattaaatgctcacatatttgatcaaatgacccaccttttaatttt 44929046  T
Q  458 aaaaataatttattctttcttctct 482  Q
    | |||||||||||| ||||||||||    
T  44929045 agaaataatttattatttcttctct 44929021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 478
Target Start/End: Original strand, 38956050 - 38956162
Alignment:
Q  366 aaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaata 464  Q
    ||||| ||| |||||||||| |||||||| |||||||||| |||| ||||||||| |||||||  |||| ||||| | | |||||||||||||| |||||    
T  38956050 aaatcctaaccattaatcca-ctttaatccaacgtctctcgtcaagtcattaaatgctcacatgcttgaacaaattatctaaattttaattttagaaata 38956148  T
Q  465 atttattctttctt 478  Q
    || |||||||||||    
T  38956149 atctattctttctt 38956162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 480
Target Start/End: Original strand, 42848711 - 42848878
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||  |||||||  |||||||||||||| |||||| ||  |||||||     |||||||||||| ||| |||||||||    
T  42848711 atatatgggataggatcaaatgacaataaggtgtcaaattaaatttgacaccaaatcctagccattaatatggttttaatctaacgactcccatcaattc 42848810  T
Q  414 attaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||||| |  ||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  42848811 attaagtgttcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 42848878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 42849552 - 42849393
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| |||||||||||||| |     
T  42849552 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattcattaagtg 42849453  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  ||||| || ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  42849452 ctcacatgcttgattaagtgacccatcttttatttttagaaataatttattcttttttct 42849393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 471
Target Start/End: Original strand, 44926643 - 44926794
Alignment:
Q  325 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaa-t 420  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||||||| ||  ||||||| ||  |||||| |||||  ||  |||||||||||||| |    
T  44926643 gatatgatcaaatgacatcaaggtgtcaaattaaattttacatcaaatcctacccattaatacagttttaatttaacggttccaatcaattcattaaagt 44926742  T
Q  421 tctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttatt 471  Q
     |||||||| |||||||| ||| |||  ||||||||||| ||||||||||||    
T  44926743 gctcacatacttgatcaactgatccatcttttaattttacaaataatttatt 44926794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 480
Target Start/End: Original strand, 13327736 - 13327905
Alignment:
Q  315 tcatatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaat 411  Q
    ||||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| ||||||| |   |||||||||||| |||  || ||     
T  13327736 tcatatatgggataagatcaaatgacaccaaggtgttaaattaaatttgacaccaaatcctaaccattaatacggttttaatctaacggctccgataaac 13327835  T
Q  412 tcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||||| |   |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||||||||    
T  13327836 tcattgagcgctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattatttcttct 13327905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 480
Target Start/End: Original strand, 39628805 - 39628898
Alignment:
Q  388 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||||||| ||  |||||||||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  39628805 tttaatctaacggcttccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 39628898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 480
Target Start/End: Complemental strand, 13328860 - 13328706
Alignment:
Q  330 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 426  Q
    ||||||||||||| |||||||  |||||||||||||| |||||  ||  ||||||| |   |||||||||||| ||  ||| || | ||||| | |||||    
T  13328860 gatcaaatgacactaaggtgttaaattaaatttgacaccaaattctagccattaatacgggtttaatctaacgacttccataaacttattaagtgctcac 13328761  T
Q  427 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||  |||||||| ||| |||  ||||| |||||||||||||||||||||||||||    
T  13328760 atgcttgatcaagtgacccaccttttatttttaaaaataatttattctttcttct 13328706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 479
Target Start/End: Complemental strand, 4776987 - 4776905
Alignment:
Q  398 cgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttc 479  Q
    ||||| ||| ||||||||||||| |||| ||  ||||||||||||  ||||||||||||||| ||||||  ||||||||||||    
T  4776987 cgtctttcaacaattcattaaatgctcatatgcttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttc 4776905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 482
Target Start/End: Original strand, 38273553 - 38273714
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| |||||||| |||| |||||||  ||| |||||||||| |||||| ||  |||||||  |  ||||||| |||| |||| ||||||||  ||| |     
T  38273553 gataggatcaaataacaccaaggtgtcaaataaaatttgacaccaaatcttatccattaatatagttttaatccaacggctctaatcaattctataagtg 38273652  T
Q  422 ctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    |||||||||| ||| ||||||||||  ||||||||||| ||| ||  |||||||||||||||    
T  38273653 ctcacatatttgattaaatgagccaccttttaattttagaaacaacctattctttcttctct 38273714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 480
Target Start/End: Complemental strand, 2477944 - 2477851
Alignment:
Q  388 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||||||| ||| ||| || ||||||| | |||||||  |||||||| ||| |||  ||||||||||| ||||||||||  |||||||||    
T  2477944 tttaatctaacggctcccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttaattttagaaataatttaaactttcttct 2477851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 325 - 478
Target Start/End: Complemental strand, 41710250 - 41710093
Alignment:
Q  325 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| |||||||||||| || |||||  |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||     
T  41710250 gataagatcaaatgacatcatggtgtcaaattaaatttgacaccaaatcataatcattaattcaactttaatccaacgtctctcatcaattcattaaatg 41710151  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  |||||||||||| | |||||||||||||| ||| |||||||||||||||    
T  41710150 ctcacatgcttgatcaaatgatctaaattttaattttagaaacaatttattctttctt 41710093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 325 - 482
Target Start/End: Original strand, 51827564 - 51827725
Alignment:
Q  325 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    ||||||||||||||||| ||||||||  |||||||||||||| |||||||||| |||||||||||||||||||  |||||||||| |||||||||||||     
T  51827564 gatatgatcaaatgacatcaaggtgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatccgacgtctctcaacaattcattaaatg 51827663  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    |||||||  ||||||||||||  ||||||||||||||| ||||||  |||||| ||||||||    
T  51827664 ctcacatgcttgatcaaatgatgcaaattttaattttagaaataaaatattctatcttctct 51827725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 41709553 - 41709676
Alignment:
Q  354 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 452  Q
    |||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||||||  |||||||||| | | ||||||||    
T  41709553 aaatttgacaccaaatcataaccattaatccaactttaatatgacgtctctcatcaattcattaaatactcacatgtttgatcaaattatctaaatttta 41709652  T
Q  453 attttaaaaataatttattctttc 476  Q
    |||||| ||| |||||||||||||    
T  41709653 attttagaaacaatttattctttc 41709676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 330 - 482
Target Start/End: Original strand, 28907893 - 28908048
Alignment:
Q  330 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 426  Q
    ||||||||||||| |||||||  ||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||| |||||||||||||  ||||    
T  28907893 gatcaaatgacactaaggtgtcaaattaaatttgacatcaaatcctaaccattaatccaactttaatccgacgtctctcaacaattcattaaatggtcac 28907992  T
Q  427 at-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||  ||||| ||||||  ||||||||||||||| ||||||  || ||||||||||||    
T  28907993 atgtttgattaaatgatgcaaattttaattttagaaataaaata-tctttcttctct 28908048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 350 - 478
Target Start/End: Complemental strand, 51829511 - 51829382
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 448  Q
    |||||||||||| |||||||| | | |||||||||||| ||||||  ||||  |||||||||||||||||| |||||||  ||||| |||||| ||||||    
T  51829511 aattaaatttgaaatcaaatccttaccattaatccaacattaatccgacgttgctcatcaattcattaaatgctcacatgcttgatgaaatgatccaaat 51829412  T
Q  449 tttaattttaaaaataatttattctttctt 478  Q
    |||||||||| |||||||||||||||||||    
T  51829411 tttaattttagaaataatttattctttctt 51829382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 53948662 - 53948818
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||     
T  53948662 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatg 53948761  T
Q  422 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||| ||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  53948762 ctcaaatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 53948818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 325 - 478
Target Start/End: Complemental strand, 53949367 - 53949211
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||||| |||     
T  53949367 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatg 53949268  T
Q  422 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  | | ||||| | | || ||||||||||| ||| |||||||||||||||    
T  53949267 ctcacatgcttaacaaattatctaatttttaattttagaaacaatttattctttctt 53949211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 325 - 478
Target Start/End: Complemental strand, 30834485 - 30834328
Alignment:
Q  325 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| |||||||||||| |||||| |  ||||||||||||||| ||||| ||| ||||||| |||| |||| |  | || |||||||||||||||||||     
T  30834485 gataggatcaaatgacatcaaggtatcaaattaaatttgacattaaatcctaaccattaattcaacattaacccgatgtttctcatcaattcattaaata 30834386  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  |||||||||| | |||||||||||||||| |||||||||||||||||||    
T  30834385 ctcacatgcttgatcaaattatccaaattttaattttagaaataatttattctttctt 30834328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 319 - 478
Target Start/End: Complemental strand, 28908710 - 28908547
Alignment:
Q  319 atatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcat 415  Q
    ||||| |||| |||||||| |||| |||||||  ||||||||||||||  ||||  ||| |||||||||||| |||||   |||| ||||||||||| ||    
T  28908710 atatgggataggatcaaataacactaaggtgtcaaattaaatttgacacaaaattctaaccattaatccaacattaattcgacgtttctcatcaattgat 28908611  T
Q  416 taaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    ||||| |||||||  |||||||||| | |||||||||||||||| |||||||||||||||||||    
T  28908610 taaatgctcacatgcttgatcaaattatccaaattttaattttagaaataatttattctttctt 28908547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 350 - 428
Target Start/End: Complemental strand, 43400794 - 43400716
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat 428  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  43400794 aattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatactcacat 43400716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 322 - 441
Target Start/End: Complemental strand, 53948629 - 53948506
Alignment:
Q  322 tgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaa 418  Q
    ||||||||||||||||||||| || |||   |||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||  |||||||||||    
T  53948629 tgagatatgatcaaatgacaccaatgtgccaaattaaatttgacaccaaatcctaaccattaatccaactttaatctgacgtctctctacaattcattaa 53948530  T
Q  419 attctcacat-attgatcaaatga 441  Q
    || |||||||  ||||||||||||    
T  53948529 atgctcacatgcttgatcaaatga 53948506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 38798254 - 38798410
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  |||||||||||||| ||||| |||| ||||||| |||||||||||  |||| || |||||||||||| |||     
T  38798254 gataggatcaaatgacactatggtgtcaaattaaatttgacaccaaattataaccattaattcaactttaatccgacgtttcacatcaattcattgaatg 38798353  T
Q  422 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    ||| |||  | | ||||| | | |||||||||||||| ||| |||||||||||||||    
T  38798354 ctcgcatgcttaacaaattatctaaattttaattttagaaacaatttattctttctt 38798410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 353 - 480
Target Start/End: Original strand, 53949371 - 53949499
Alignment:
Q  353 taaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttt 451  Q
    ||||||||||| ||||||||| |||||||| |   |||||||||||| ||| |||||||||||||| | |||||||  |||||||| ||| |||  ||||    
T  53949371 taaatttgacaccaaatcatagtcattaatacggttttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgatccatctttt 53949470  T
Q  452 aattttaaaaataatttattctttcttct 480  Q
    | ||||| |||||||||||||||| ||||    
T  53949471 atttttagaaataatttattcttttttct 53949499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 317 - 482
Target Start/End: Original strand, 11238510 - 11238677
Alignment:
Q  317 atatatgagatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| |||||||||||| ||||||||  |||||||||||||| |||||| ||| ||||||| ||| ||| ||||||||  || |||||||||    
T  11238510 atatatgggataggatcaaatgacatcaaggtgtcaaattaaatttgacaccaaatcctaaccattaatacaattttcatctaacggttcccatcaattc 11238609  T
Q  414 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||||| | |||||||  |  | ||||||   |  ||||||||||| |||||||||||||||||| ||||    
T  11238610 attaagtgctcacatgct-tttaaatgacatactttttaattttagaaataatttattctttctcctct 11238677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 47169211 - 47169052
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  47169211 gataagatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtg 47169112  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  47169111 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 47169052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 47167889 - 47168048
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   ||||||||||||  |||| | || ||||||| |     
T  47167889 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggttctcgtaaactcattaagtg 47167988  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  47167989 ctcacatgcttgatcaagtgatccaccttttatttttagaaataatttattctttcttct 47168048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 53950131 - 53949972
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |    ||||||||||| ||  |||||||||||||| |     
T  53950131 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacgggcttaatctaacggcttccatcaattcattaagtg 53950032  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||| ||||    
T  53950031 ctcacatgtttgatcaagtgatccatcttttatttttagaaataatttattttttattct 53949972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 482
Target Start/End: Original strand, 30833747 - 30833832
Alignment:
Q  397 acgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    |||||||||| ||||||||||||| |||||||  ||| ||||||||  ||||||||||||||| ||||||  || ||||||||||||    
T  30833747 acgtctctcaacaattcattaaatgctcacatgcttgttcaaatgatgcaaattttaattttagaaataaaata-tctttcttctct 30833832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 475
Target Start/End: Complemental strand, 24486007 - 24485855
Alignment:
Q  317 atatatgagatatgatcaaatgacacaaggtgtaattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcatt 416  Q
    |||||||||||| |||||||||||||||       ||||||||||||  |||||||| ||||||||  || ||||||||||||  |  ||||||||||||    
T  24486007 atatatgagataagatcaaatgacacaa-------ttaaatttgacactaaatcatagtcattaatataattttaatctaacggtttccatcaattcatt 24485915  T
Q  417 aaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattcttt 475  Q
    || |  | ||||  ||||||||||||   |  |||||||||||| | |||||||||||||    
T  24485914 aagtggttacatgtttgatcaaatgatttaccttttaattttaatagtaatttattcttt 24485855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 414
Target Start/End: Complemental strand, 20200662 - 20200570
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattca 414  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||||||||||    
T  20200662 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattca 20200570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 414
Target Start/End: Complemental strand, 20202846 - 20202754
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattca 414  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||||||||||    
T  20202846 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattca 20202754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 30833686 - 30833745
Alignment:
Q  328 atgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatcc 384  Q
    ||||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||    
T  30833686 atgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatcc 30833745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 325 - 476
Target Start/End: Complemental strand, 26774724 - 26774573
Alignment:
Q  325 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    ||||||||||||||||| || |||||  ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||     
T  26774724 gatatgatcaaatgacatcatggtgtcaaatcaaatttgacatcaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatg 26774625  T
Q  422 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttc 476  Q
    |||||   |||||||||| | | |||||||||||||| |||||||||||||||||    
T  26774624 ctcac---ttgatcaaattatctaaattttaattttagaaataatttattctttc 26774573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 317 - 482
Target Start/End: Complemental strand, 43334788 - 43334620
Alignment:
Q  317 atatatgagatatgatcaaatgacacaagg-tgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| | | |||  |||||||||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  43334788 atatatgggataggatcaaatgacaccatgatgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatctaacgtctatcatcaattc 43334689  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||||||| |||||||  |||||||||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  43334688 attaaatgctcacatgcttgatcaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 43334620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 350 - 478
Target Start/End: Original strand, 3474932 - 3475061
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 448  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||| | ||||    
T  3474932 aattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaat 3475031  T
Q  449 tttaattttaaaaataatttattctttctt 478  Q
    |||||||||| ||| |||||||||||||||    
T  3475032 tttaattttagaaacaatttattctttctt 3475061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 317 - 482
Target Start/End: Complemental strand, 3163559 - 3163391
Alignment:
Q  317 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| ||||||||||    
T  3163559 atatatgggataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctatcatcaattc 3163460  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||||||| |||||||  ||||| |||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  3163459 attaaatgctcacatgcttgattaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 3163391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 26773996 - 26774153
Alignment:
Q  325 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| |||||||||||| || |||||  ||||||||||||||  ||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||     
T  26773996 gataggatcaaatgacatcatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccaacgtctctcgtcaattcattaaatg 26774095  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  |||||||||||| | |||||||||||||| |||||||||||||||||||    
T  26774096 ctcacatgcttgatcaaatgatctaaattttaattttagaaataatttattctttctt 26774153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 350 - 482
Target Start/End: Complemental strand, 30470126 - 30469994
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 448  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||  |||||||||||| ||||||    
T  30470126 aattaaatttgacaccaaatcataaccattaattcaactttaatcaaacgtctatcatcaattcattaaatgctcacatgcttgatcaaatgatccaaat 30470027  T
Q  449 tttaattttaaaaataatttattctttcttctct 482  Q
    |||||||||| ||| ||||| |||||||||||||    
T  30470026 tttaattttagaaacaattt-ttctttcttctct 30469994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 325 - 476
Target Start/End: Complemental strand, 3475624 - 3475469
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  ||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||     
T  3475624 gataggatcaaatgacaccatggtgtcaaatcaaatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaata 3475525  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 476  Q
    |||||||  |||||||||| | | |||||||||||| | ||| |||||||||||||    
T  3475524 ctcacatgcttgatcaaattatctaaattttaatttaagaaacaatttattctttc 3475469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 350 - 478
Target Start/End: Original strand, 37422589 - 37422717
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 449  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||| |||||||  | ||||||| | | || ||    
T  37422589 aattaaatttgacatcaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcacatgcttatcaaattatctaattt 37422688  T
Q  450 ttaattttaaaaataatttattctttctt 478  Q
    ||||||||| ||| |||||||||||||||    
T  37422689 ttaattttagaaacaatttattctttctt 37422717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 3162871 - 3163027
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||| ||||||||| |||||||||||||| |||||||||     
T  3162871 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatg 3162969  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  |||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  3162970 ctcacatgcttgaacaaataatccaaattttaattttagaaataatttattccttctt 3163027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 43334132 - 43334288
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||     
T  43334132 gataggatcaaatgacaccaaggtgtcaaattaagtttgacatcaaatcataaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatg 43334230  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||   ||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  43334231 ctcacatgcctgaacaaataatccaaattttaattttagaaataatttattccttctt 43334288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 325 - 482
Target Start/End: Complemental strand, 46428172 - 46428012
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  |||||||||||||| ||||| |||| ||||||| ||||||||||| ||||||| |||||||||||||||||     
T  46428172 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaattataaccattaattcaactttaatccaacgtctatcatcaattcattaaatg 46428073  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    |||||||  |||||||||||| | |||||||||||||| ||| ||||| |||||||||||||    
T  46428072 ctcacatgcttgatcaaatgatctaaattttaattttagaaacaattt-ttctttcttctct 46428012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 317 - 471
Target Start/End: Original strand, 30469506 - 30469663
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||| ||||||| | |||||||||||||| ||    
T  30469506 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatcca-ctttaatttgacgtctctcatcaaatc 30469604  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttatt 471  Q
    ||||||| |||||||  |||| ||||| | |||||||||||||||| ||||||||||||    
T  30469605 attaaatgctcacatgcttgaacaaataatccaaattttaattttagaaataatttatt 30469663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 30659857 - 30660013
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||     
T  30659857 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatg 30659956  T
Q  422 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    ||| |||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  30659957 ctcgcatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 30660013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 8487862 - 8487703
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| ||  |||||||||||| |||||||||||||||||| |     
T  8487862 gataggatcaaatgacacgaaggtgtcaaattaaatttgacaccaaatcctagccattaatacagttttaatctaacggctctcatcaattcattaagtg 8487763  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  8487762 ctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 8487703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 480
Target Start/End: Complemental strand, 21866409 - 21866278
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaat 448  Q
    ||||||| ||||||  ||||| ||| ||||||| ||  |||||||||| || ||||||||||||||||| | ||||||| || |||||||||| |||  |    
T  21866409 aattaaagttgacacaaaatcctaaccattaatacagttttaatctaatgtttctcatcaattcattaagtgctcacatgtttgatcaaatgacccacct 21866310  T
Q  449 tttaattttaaaaataatttattctttcttct 480  Q
    ||||||||||||||||||||||||||||||||    
T  21866309 tttaattttaaaaataatttattctttcttct 21866278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 350 - 478
Target Start/End: Complemental strand, 30660534 - 30660406
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 449  Q
    |||||||||||| | |||||||||| ||||||| |||||||||||  |||||||||||||||||||| ||| ||| |||  | | ||||| | | |||||    
T  30660534 aattaaatttgagaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatgctcccatgcttaacaaattatctaaatt 30660435  T
Q  450 ttaattttaaaaataatttattctttctt 478  Q
    ||||||||| ||| |||||||||||||||    
T  30660434 ttaattttagaaacaatttattctttctt 30660406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 480
Target Start/End: Original strand, 8487023 - 8487190
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |    ||||||||||| |||||||||||||    
T  8487023 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacgggcttaatctaacggctctcatcaattc 8487122  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  8487123 attaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttgttct 8487190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 480
Target Start/End: Original strand, 8512698 - 8512865
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |    ||||||||||| |||||||||||||    
T  8512698 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacgggcttaatctaacggctctcatcaattc 8512797  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  8512798 attaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttattct 8512865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 8513517 - 8513358
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  || |||| ||  |||||||||||| ||| |||||||||||||| |     
T  8513517 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccaataatacagttttaatctaacggctcccatcaattcattaagtg 8513418  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  8513417 ctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 8513358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 468
Target Start/End: Original strand, 38816720 - 38816835
Alignment:
Q  354 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 452  Q
    |||||||||| ||||||||||  ||||||| ||||||||||| | ||||||||||||||||| |||| |||||||  |||||||||| | | ||||||||    
T  38816720 aaatttgacaccaaatcataactattaatctaactttaatctgatgtctctcatcaattcatcaaatgctcacatgcttgatcaaattatctaaatttta 38816819  T
Q  453 attttaaaaataattt 468  Q
    |||||| ||| |||||    
T  38816820 attttagaaacaattt 38816835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 317 - 480
Target Start/End: Complemental strand, 25245724 - 25245556
Alignment:
Q  317 atatatgagatatgatcaaa-tgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaatt 412  Q
    ||||||| |||||||||||| |||||| || ||||  ||||||||| |||| |||||| ||  ||||||| |   |||||||||| | ||||||| ||||    
T  25245724 atatatgggatatgatcaaaatgacaccaatgtgtcaaattaaattagacaccaaatcttagccattaatactgttttaatctaatgactctcattaatt 25245625  T
Q  413 cattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||| | ||||||| || |||||| ||| |||  ||||||||||| |||||||||||||||||||||    
T  25245624 cattaagtgctcacatgtttgatcaagtgatccaccttttaattttagaaataatttattctttcttct 25245556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 31178642 - 31178800
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||||||||||||||||| ||| |||  |||||||||||||| |||||| ||  ||||||| ||  |||||||||||| ||| ||| || |||||||||     
T  31178642 gatatgatcaaatgacaccaagatgtcaaattaaatttgacaccaaatcctagccattaatacagttttaatctaacggctcccataaactcattaaata 31178741  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||| ||||||||||||||    
T  31178742 ctcacatgcttgatcaagtgacccaccttttatttttagaaataa-ttattctttcttct 31178800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 38059849 - 38060008
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  38059849 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtg 38059948  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  38059949 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 38060008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 480
Target Start/End: Original strand, 28451192 - 28451285
Alignment:
Q  388 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||||||| |||||||||||||||||| | |||||||| |||||||| ||| | |  ||||| ||||| |||||||| ||||||||||||    
T  28451192 tttaatctaacggctctcatcaattcattaagtactcacatacttgatcaagtgaccaatcttttatttttagaaataattcattctttcttct 28451285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 21865651 - 21865727
Alignment:
Q  405 catcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||||||||| | ||||||| || |||||| ||| |||  |||||||||||||||||||||||||||||||||    
T  21865651 catcaattcattaagtgctcacatttttgatcaagtgacccaccttttaattttaaaaataatttattctttcttct 21865727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 471
Target Start/End: Original strand, 46427550 - 46427644
Alignment:
Q  377 attaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttatt 471  Q
    ||||||||| ||||||| | | |||||||||||| ||||||||| |||||||  |||| ||||| | |||||||||||||||| ||||||||||||    
T  46427550 attaatcca-ctttaatatgatgtctctcatcaaatcattaaatgctcacatgcttgaacaaataatccaaattttaattttagaaataatttatt 46427644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 330 - 482
Target Start/End: Original strand, 42519647 - 42519803
Alignment:
Q  330 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 426  Q
    ||||||||||||| |||||||  |||||||||||||| |||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| ||||     
T  42519647 gatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaa 42519746  T
Q  427 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||| ||||||||||||  ||||||||||||||| ||||||  |||||||||||||||    
T  42519747 atacttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttctct 42519803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 325 - 478
Target Start/End: Complemental strand, 42520485 - 42520328
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| |||||||| |||| |||||||  |||||||||||||| |||||  ||| ||||||| |||| |||||| |||||||||||||||||||||||||     
T  42520485 gataggatcaaataacaccaaggtgtcaaattaaatttgacaccaaattctaaccattaattcaacattaatccaacgtctctcatcaattcattaaatg 42520386  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    |||||||  ||||| |||||| ||||| |||||||||| ||||||| |||||||||||    
T  42520385 ctcacatgcttgatgaaatgatccaaactttaattttagaaataatgtattctttctt 42520328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 480
Target Start/End: Complemental strand, 42521753 - 42521586
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||||||| || ||    
T  42521753 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctctcataaactc 42521654  T
Q  414 attaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  42521653 attaagtgctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 42521586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 317 - 480
Target Start/End: Complemental strand, 21148159 - 21147992
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    |||||||||||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||    
T  21148159 atatatgagataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactc 21148060  T
Q  414 attaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||||| |  ||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  21148059 attaagtgttcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 21147992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 23206248 - 23206089
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||||||| || ||||||| |     
T  23206248 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctctcataaactcattaagtg 23206149  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  23206148 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 23206089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 42520619 - 42520778
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgtaat--taaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| ||||||| ||  ||||||| ||| |||||| ||  ||||||| |   |||||||||||| ||||||| || ||||||| |     
T  42520619 gataggatcaaatgacaccaaggtgtcatattaaattttacaccaaatcctagccattaatacggttttaatctaacgactctcataaactcattaagtg 42520718  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  42520719 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 42520778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 21145938 - 21146097
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  21145938 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtg 21146037  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| ||||||||||  |||||||||    
T  21146038 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttaaactttcttct 21146097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 31218780 - 31218851
Alignment:
Q  405 catcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattcttt 475  Q
    ||||||||||| |||| ||||||   |||||||||||| |||  ||||||||||| ||||||||||||||||    
T  31218780 catcaattcatcaaatgctcacaaggttgatcaaatgacccaccttttaattttagaaataatttattcttt 31218851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 31219934 - 31219884
Alignment:
Q  430 ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||||||| | |  |||||||||||||| ||||||||||||||||||    
T  31219934 ttgatcaaatgacctaccttttaattttaaaattaatttattctttcttct 31219884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 317 - 478
Target Start/End: Original strand, 21824551 - 21824715
Alignment:
Q  317 atatatgagatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||||||| |||||  ||| |||||||||| ||||||||| |||||||||||||| ||    
T  21824551 atatatgggatatgatcaaatgacatcaaggtgtcaaattaaatttgacaccaaattctaaccattaatcca-ctttaatctgacgtctctcatcaaatc 21824649  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    ||||||| |||||||  |||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  21824650 attaaatgctcacatgcttgaacaaataatccaaattttaattttagaaataatttattccttctt 21824715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 325 - 482
Target Start/End: Complemental strand, 21825201 - 21825041
Alignment:
Q  325 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| | |||||  |||||||||||||| ||||| |||| ||||||| ||||||||||| ||||||| |||||||||||||||||     
T  21825201 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaattataaccattaattcaactttaatccaacgtctatcatcaattcattaaatg 21825102  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    |||||||  |||||||||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  21825101 ctcacatgcttgatcaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 21825041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 42882750 - 42882909
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||||||||||||||||| || ||||  |||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||     
T  42882750 gatatgatcaaatgacaccaatgtgttaaattaaatttgacaccaaatcataaccattaatccaattttaatctaacgtccctcatcaattcattaaatg 42882849  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
     || |||   ||||||||||| | ||| |||||||||| |||||||||||| ||||||||    
T  42882850 ttcccatgcctgatcaaatgatcaaaaatttaattttagaaataatttattttttcttct 42882909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 376 - 482
Target Start/End: Complemental strand, 42883468 - 42883361
Alignment:
Q  376 cattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctt 474  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||  ||||||  ||||||||||||  ||||||||||||||| |||||||||||||||    
T  42883468 cattaatccaactttaatctgacgtccctcatcaattcattaaatgttcacatgcttgatcaaatgattcaaattttaattttataaataatttattctt 42883369  T
Q  475 tcttctct 482  Q
    ||||||||    
T  42883368 tcttctct 42883361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 45919513 - 45919672
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  ||||||||||||||||||||| || |||||||| |   |||||||||||| |||||||||||||||||| |     
T  45919513 gataggatcaaatgacaccaaggtgtcaaattaaatttgacatcaaatcctagtcattaatacggttttaatctaacggctctcatcaattcattaagtg 45919612  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  45919613 ctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 45919672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 480
Target Start/End: Complemental strand, 45920310 - 45920182
Alignment:
Q  353 taaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttt 451  Q
    ||||||||||| |||||  ||  ||||||| ||  |||||||||||| ||| |||||||||||||| | |||||||  |||||||| ||| |||  ||||    
T  45920310 taaatttgacaccaaattctagccattaatacagttttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatctttt 45920211  T
Q  452 aattttaaaaataatttattctttcttct 480  Q
    | ||||| |||||||||||||||||||||    
T  45920210 atttttagaaataatttattctttcttct 45920182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 46619681 - 46619522
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||||||   |||||| |   |||||||||||| ||| ||| || ||||||| |     
T  46619681 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcatagcaattaatacggttttaatctaacggctcccataaactcattaagtg 46619582  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||||||||    
T  46619581 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattttttcttct 46619522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 350 - 480
Target Start/End: Original strand, 46618380 - 46618511
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaat 448  Q
    |||| |||||||||||||||| ||  ||||||| |   ||||||||||||  |||||| || ||||||| | ||||||| || |||||| ||| ||| ||    
T  46618380 aatttaatttgacatcaaatcctagccattaatacggttttaatctaacggttctcataaactcattaagtgctcacatgtttgatcaagtgatccacat 46618479  T
Q  449 tttaattttaaaaataatttattctttcttct 480  Q
    |||| ||||| |||||||||||||||||||||    
T  46618480 tttatttttagaaataatttattctttcttct 46618511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 480
Target Start/End: Original strand, 42058516 - 42058645
Alignment:
Q  350 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 449  Q
    |||||||||||||| |||||| |||  ||||||  || ||||||||||||  |||||| ||||||||||||  ||||||  |  ||||||||   |  ||    
T  42058516 aattaaatttgacaccaaatcctaactattaatataattttaatctaacggttctcataaattcattaaatgttcacatgctt-tcaaatgatatacctt 42058614  T
Q  450 ttaattttaaaaataatttattctttcttct 480  Q
    |||||||||||||||||||||||||||||||    
T  42058615 ttaattttaaaaataatttattctttcttct 42058645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 41695386 - 41695545
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| |||| |||||| |   |||||||||||| ||  |||||||||||||| |     
T  41695386 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaattattaatacggttttaatctaacggcttccatcaattcattaagtg 41695485  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
     ||||||  |||||||| ||  |||  ||||| ||||| |||||||||||||||| ||||    
T  41695486 ttcacatgtttgatcaagtggcccattttttatttttagaaataatttattcttttttct 41695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 41696174 - 41696015
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| |||||||||| || |||||||  |||||||||||||| |||||| ||   |||||| |   |||||||||||| ||| |||||||||||||| |     
T  41696174 gataggatcaaatgataccaaggtgtcaaattaaatttgacaccaaatcttagctattaatacggttttaatctaacggctcccatcaattcattaagtg 41696075  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||   |||| |||| ||||||||||||||||||||||    
T  41696074 ctcacatgcttgatcaagtgacccatcctttattttttaaaataatttattctttcttct 41696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 482
Target Start/End: Complemental strand, 4158665 - 4158504
Alignment:
Q  325 gatatgatcaaatgacaca-aggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| |||||||||||||  ||||||  |||||||||||||| |||||| ||  ||||||| ||| ||||||||||||  |  ||| |||| ||||| |     
T  4158665 gataggatcaaatgacacttaggtgtcaaattaaatttgacaccaaatcctagccattaatacaattttaatctaacggtttccattaatttattaagtg 4158566  T
Q  422 ctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 482  Q
    ||||||| || ||||||||||   |  ||||||||||| ||||||||||||||||| |||||    
T  4158565 ctcacatgtttgatcaaatgacatatcttttaattttagaaataatttattctttcatctct 4158504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 429
Target Start/End: Original strand, 31915171 - 31915272
Alignment:
Q  330 gatcaaatgacacaaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcaca 427  Q
    ||||||||||||||||||||  |||||||||||||| |||||  || |||||||| |   ||||||||||||  |||||| |||| ||||| | ||||||    
T  31915171 gatcaaatgacacaaggtgtcaaattaaatttgacaccaaattctagtcattaatacggttttaatctaacggttctcattaatttattaagtgctcaca 31915270  T
Q  428 ta 429  Q
    ||    
T  31915271 ta 31915272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 480
Target Start/End: Original strand, 29212062 - 29212155
Alignment:
Q  388 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||||||  ||| |||||||||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||||||||    
T  29212062 tttaatctaacagctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattatttcttct 29212155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 482
Target Start/End: Original strand, 4157900 - 4157934
Alignment:
Q  448 ttttaattttaaaaataatttattctttcttctct 482  Q
    ||||||||||| |||||||||||||||||||||||    
T  4157900 ttttaattttagaaataatttattctttcttctct 4157934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 482
Target Start/End: Complemental strand, 24377971 - 24377843
Alignment:
Q  354 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaatttta 452  Q
    |||||| |||||||||| || ||||||||  |  |||||||||||  |||| |||||||| |||| |  ||||||  ||||| |||||| |||  |||||    
T  24377971 aaatttaacatcaaatcttattcattaatatagttttaatctaacagctctaatcaattcgttaagtgatcacatgcttgat-aaatgaaccacctttta 24377873  T
Q  453 attttaaaaataatttattctttcttctct 482  Q
    |||||| ||| ||| |||||||||||||||    
T  24377872 attttagaaacaatctattctttcttctct 24377843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 52362743 - 52362802
Alignment:
Q  328 atgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatcc 384  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||  ||| |||||||||    
T  52362743 atgatcaaatgacatcaaggtgttaaattaaatttgacatcaaattttaaccattaatcc 52362802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 359 - 482
Target Start/End: Complemental strand, 1798 - 1674
Alignment:
Q  359 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaatttt 457  Q
    ||||| |||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| |||| ||| ||||||||||||  ||||||||||||||    
T  1798 tgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaaatacttgatcaaatgatgcaaattttaatttt 1699  T
Q  458 aaaaataatttattctttcttctct 482  Q
    | ||||||  |||||||||||||||    
T  1698 agaaataaaatattctttcttctct 1674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 317 - 478
Target Start/End: Original strand, 992 - 1154
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| || ||||  |||||||||||||| |||||| ||| ||||||| |||| |||||| |||||||||||||||||     
T  992 atatatgggataggatcaaatgacaccaaagtgtcaaattaaatttgacaccaaatcctaaccattaattcaacattaatccaacgtctctcatcaattt 1091  T
Q  414 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 478  Q
    ||||||| |||||||  |  | |||||| ||||| |||||||||| |||||||||||||||||||    
T  1092 attaaatgctcacatgct--tgaaatgatccaaactttaattttagaaataatttattctttctt 1154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 317 - 480
Target Start/End: Original strand, 105504 - 105671
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| ||||||| |   |||||||||||| ||| |||||||||    
T  105504 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcttaaccattaatacggttttaatctaacggctcccatcaattc 105603  T
Q  414 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||||  |  ||||||  |||||||| |||  ||  ||||| ||||| |||||||||||||||||||||    
T  105604 attatgtgttcacatgcttgatcaagtgacgcatcttttatttttagaaataatttattctttcttct 105671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 325 - 480
Target Start/End: Complemental strand, 106343 - 106184
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||| ||| ||||||| |    ||||||||||| | | |||||||||||||| |     
T  106343 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatacgggcttaatctaacggcgcccatcaattcattaagtg 106244  T
Q  422 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  106243 ctcacatgcttgatcaagtgatccatcttttatttttagaaataatttattctttattct 106184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 317 - 480
Target Start/End: Original strand, 20724 - 20889
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    |||||||||||| ||||||||||||| |||||||  ||||||||||||||  ||||| ||  ||||||| | | |||||||||| | |||  || |||||    
T  20724 atatatgagataggatcaaatgacaccaaggtgtcaaattaaatttgacactaaatcctagccattaatactattttaatctaatggctc--attaattc 20821  T
Q  414 attaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||||| |  |||||| || |||||| ||| |||  ||||||||||| |||||||||||||||||||||    
T  20822 attaagtgatcacatgtttgatcaagtgatccaccttttaattttagaaataatttattctttcttct 20889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 25616 - 25775
Alignment:
Q  325 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 421  Q
    |||| ||||||||||||| || ||||  |||||||||||||| ||||||  |  ||||||| ||  ||||||||||||||||||||||||||||||| |     
T  25616 gataggatcaaatgacaccaatgtgtcaaattaaatttgacaccaaatcccagccattaatacagttttaatctaacgtctctcatcaattcattaagtg 25715  T
Q  422 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
     ||||||  |||||||| |||   |  ||||| ||||| |||||||||||||||||||||    
T  25716 ttcacatgcttgatcaagtgacaaatgttttatttttagaaataatttattctttcttct 25775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 480
Target Start/End: Original strand, 609 - 771
Alignment:
Q  317 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 413  Q
    ||||||| |||| ||||||||||||| || ||||  |||||||||||||| || ||| ||  ||||||| |   |||||||||||| ||| ||| || ||    
T  609 atatatgggataggatcaaatgacaccaatgtgtcaaattaaatttgacaccagatcctagccattaatacggttttaatctaacggctcccataaactc 708  T
Q  414 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    ||||| | ||||||    |||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  709 attaagtgctcaca----gatcaagtgatccaccttttatttttagaaataatttattctttcttct 771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 480
Target Start/End: Complemental strand, 2312 - 2219
Alignment:
Q  388 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 480  Q
    |||||||||||| ||  ||| || ||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  2312 tttaatctaacggcttccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 2219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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