View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0600-Insertion-4 (Length: 416)
Name: NF0600-Insertion-4
Description: NF0600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0600-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 412
Target Start/End: Original strand, 39591240 - 39591645
Alignment:
| Q |
7 |
actaacagcctattttagcttcttggggaaatatttcacatataacttctatcatagaagttctatggatcagaaatgcttcctagacctgtagtggcaa |
106 |
Q |
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| T |
39591240 |
actaacagcctattttagcttcttggggaaatatttcacatataacttctatcatagaagttctatggatcagaaatgcttcctagacctgtagtggcaa |
39591339 |
T |
|
| Q |
107 |
gtttactgacaagagctagagcgttactggttatataataggctttgagaaccctattttgcagcaattgaattttcctaccgttttcgccttgaaaccc |
206 |
Q |
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| T |
39591340 |
gtttactgacaagagctagagcgttactggttatataataggctttgagaaccctattttgcagcaattgaattttcctaccgttttcgccttgaaaccc |
39591439 |
T |
|
| Q |
207 |
atcaaggcaagtatcttgatctgtgagtgctgcacttatccatgtattaaggtcccccatctgggtaccaaatgtccttctactaagccttctgagcaca |
306 |
Q |
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| T |
39591440 |
atcaaggcaagtatcttgatctgtgagtgccgcacttatccatgtattaaggtcccccatctgggtaccaaatgtccttctactaagccttctgagcaca |
39591539 |
T |
|
| Q |
307 |
ttcagtgatctatgaagctcatcaagggcatctgcaatagtctcgacacaatctaatagtgcaactttatttcttcctcttaaacgcccgtgtctagtta |
406 |
Q |
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| T |
39591540 |
ttcagtgatctatgaagctcatcaagggcatctgcaatagtctcgacacaatctaatagtgcaactttatttcttcctcttaaacgcccgtgtctagtta |
39591639 |
T |
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| Q |
407 |
agtttg |
412 |
Q |
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| T |
39591640 |
agtttg |
39591645 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 281
Target Start/End: Complemental strand, 44345781 - 44345603
Alignment:
| Q |
103 |
gcaagtttactgacaagagctagagcgttactggttatataataggctttgagaaccctattttgcagcaattgaattttccta-ccgttttcgccttga |
201 |
Q |
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||||||||| |||||||||| || |||||||| ||||| ||| | | || |||| ||||||||||||||| ||||||| | |||||||| |||| | |
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| T |
44345781 |
gcaagtttattgacaagagcaagtgcgttacttgttatgtaagacacgttcttaaccttattttgcagcaatttaattttcttctccgttttc-ccttca |
44345683 |
T |
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| Q |
202 |
aacccatcaaggcaagtatcttgatctgtgagtgctgcacttatccatgtattaaggtcccccatctgggtaccaaatgt |
281 |
Q |
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|||||||||||||| || |||| || || || |||||||| |||||||| || || |||||||| || |||| |||||| |
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| T |
44345682 |
aacccatcaaggcatgtgtcttcattagtaagagctgcactaatccatgtgttgagatcccccatttgtgtactaaatgt |
44345603 |
T |
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