View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0600-Insertion-5 (Length: 137)
Name: NF0600-Insertion-5
Description: NF0600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0600-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 3790801 - 3790906
Alignment:
| Q |
26 |
tgaagaggagttggcaaaccatgacaatgaagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagct |
125 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3790801 |
tgaagaggagttggcaaaccatgaaaa------ggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagct |
3790894 |
T |
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| Q |
126 |
gggtttccatga |
137 |
Q |
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|||||||||||| |
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| T |
3790895 |
gggtttccatga |
3790906 |
T |
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Target: chr7 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 12811238 - 12811343
Alignment:
| Q |
26 |
tgaagaggagttggcaaaccatgacaatgaagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagct |
125 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12811238 |
tgaagaggagttggcaaaccatgaaaa------ggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagct |
12811331 |
T |
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| Q |
126 |
gggtttccatga |
137 |
Q |
| |
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|||||||||||| |
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| T |
12811332 |
gggtttccatga |
12811343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 2e-38; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 1655153 - 1655048
Alignment:
| Q |
26 |
tgaagaggagttggcaaaccatgacaatgaagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagct |
125 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1655153 |
tgaagaggagttggcaaaccatgaaaa------ggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagct |
1655060 |
T |
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| Q |
126 |
gggtttccatga |
137 |
Q |
| |
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|||||||||||| |
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| T |
1655059 |
gggtttccatga |
1655048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 9129049 - 9129154
Alignment:
| Q |
26 |
tgaagaggagttggcaaaccatgacaatgaagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagct |
125 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9129049 |
tgaagaggagttggcaaaccatgaaaa------ggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagct |
9129142 |
T |
|
| Q |
126 |
gggtttccatga |
137 |
Q |
| |
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|||||||||||| |
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| T |
9129143 |
gggtttccatga |
9129154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 37152810 - 37152705
Alignment:
| Q |
26 |
tgaagaggagttggcaaaccatgacaatgaagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagct |
125 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37152810 |
tgaagaggagttggcaaaccatgaaaa------ggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagct |
37152717 |
T |
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| Q |
126 |
gggtttccatga |
137 |
Q |
| |
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|||||||||||| |
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| T |
37152716 |
gggtttccatga |
37152705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 45223127 - 45223022
Alignment:
| Q |
26 |
tgaagaggagttggcaaaccatgacaatgaagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagct |
125 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45223127 |
tgaagaggagttggcaaaccatgaaaa------ggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagct |
45223034 |
T |
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| Q |
126 |
gggtttccatga |
137 |
Q |
| |
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|||||||||||| |
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| T |
45223033 |
gggtttccatga |
45223022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 26650922 - 26650836
Alignment:
| Q |
26 |
tgaagaggagttggcaaaccatgacaatgaagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaa |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||| || || ||||||||||||| |
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| T |
26650922 |
tgaagaggagttggcaaaccatgacaatgaagaggaggggattcataaaaatgaagagttaaagaaagggattgatgatatgctgaa |
26650836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 2e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 23781081 - 23780976
Alignment:
| Q |
26 |
tgaagaggagttggcaaaccatgacaatgaagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagct |
125 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23781081 |
tgaagaggagttggcaaaccatgaaaa------ggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagct |
23780988 |
T |
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| Q |
126 |
gggtttccatga |
137 |
Q |
| |
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|||||||||||| |
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| T |
23780987 |
gggtttccatga |
23780976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 52635862 - 52635967
Alignment:
| Q |
26 |
tgaagaggagttggcaaaccatgacaatgaagaggatgaggttcagaaaaatgaagagttaaagaaatgggttcatgatatgctgaagatttatatagct |
125 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52635862 |
tgaagaggagttggcaaaccatgaaaa------ggatgaggttcagaaaaatgaaaagttaaagaaatgggttcatgatatgctgaagatttatatagct |
52635955 |
T |
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| Q |
126 |
gggtttccatga |
137 |
Q |
| |
|
|||||||||||| |
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| T |
52635956 |
gggtttccatga |
52635967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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