View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0600-Insertion-6 (Length: 92)
Name: NF0600-Insertion-6
Description: NF0600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0600-Insertion-6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 53; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 28924668 - 28924752
Alignment:
| Q |
8 |
caactagggtgagtgtatggtttacacaaatcataggcatacnnnnnnnngaagaatatggatacacaaatcatatcggataaca |
92 |
Q |
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| T |
28924668 |
caactaaggtgagtgtatggtttacaaaaatcataggcatacttttttttgaagaatatggatacacaaatcatatcggataaca |
28924752 |
T |
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 28901090 - 28901124
Alignment:
| Q |
58 |
gaagaatatggatacacaaatcatatcggataaca |
92 |
Q |
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| T |
28901090 |
gaagaatatggatacacaaatcatatcgaataaca |
28901124 |
T |
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