View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0600-Insertion-8 (Length: 632)
Name: NF0600-Insertion-8
Description: NF0600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0600-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 207 - 632
Target Start/End: Complemental strand, 29319252 - 29318827
Alignment:
| Q |
207 |
aatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatgctgtgcatcagctttgtctctttttggaatagga |
306 |
Q |
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| T |
29319252 |
aatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatgttgtgcatcagctttgtctctttttggaatagga |
29319153 |
T |
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| Q |
307 |
tttgcacggcatctaagagaaacctctcagttttatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaatcaaagcttaactctttat |
406 |
Q |
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| T |
29319152 |
tttgcacggcatctaagagaaacctctcaatttaatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaatcaaagcttaactctttat |
29319053 |
T |
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| Q |
407 |
cactttgcaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagattggaatga |
506 |
Q |
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| T |
29319052 |
cactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagattggaatga |
29318953 |
T |
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| Q |
507 |
gaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgctttgtgtgttgttgctggattagaggttaag |
606 |
Q |
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| T |
29318952 |
gaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgatgtgtgtgttgctgctggattagaggttaag |
29318853 |
T |
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| Q |
607 |
cagaagcttgtttcagttagtggcaa |
632 |
Q |
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| T |
29318852 |
gataagcttgtttcaattagtggcaa |
29318827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 29319320 - 29319282
Alignment:
| Q |
17 |
ctcatcagtcatcaccatagtttcctttcctaaacaaaa |
55 |
Q |
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| T |
29319320 |
ctcatcagtcatcgccatagtttcctttcctaaacaaaa |
29319282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 173 - 629
Target Start/End: Original strand, 717199 - 717655
Alignment:
| Q |
173 |
ctacatgtcctatggaccttaactatgtcctaagaatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatg |
272 |
Q |
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| T |
717199 |
ctacatgtcctatggaccttaactatgtcctaagaattcattggaactcttcagcttgtcaaaatttcaattctttatcatccaaagaaactagcacatg |
717298 |
T |
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| Q |
273 |
ctgtgcatcagctttgtctctttttggaataggatttgcacggcatctaagagaaacctctcagttttatcttcaagatcttcaaacttcaatttcatgc |
372 |
Q |
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| T |
717299 |
ttgtgcatctgttttgtctctctttggaataggatttgcacagcatcttaaagaaacttcacagttcaatcttcaagatcttcaaacttcaaattcatgc |
717398 |
T |
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| Q |
373 |
atgcaagattttcaatcaaagcttaactctttatcactttgcaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatat |
472 |
Q |
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| T |
717399 |
atgcaagattttcaatcaaagcttaactctttatcactttacaacaacttggtcaactcttgttttgaccctcttcaatttgttatctctcgtaacatat |
717498 |
T |
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| Q |
473 |
gtgcaggtattgaaactgttcaagattggaatgagaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatg |
572 |
Q |
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| T |
717499 |
gtgcaggtattgaaactgttcatgattggaatgagaaagtgggtcagaattcatctttgaatactgcttgtaaaccagatctcactcatctttctcaatg |
717598 |
T |
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| Q |
573 |
cgctttgtgtgttgttgctggattagaggttaagcagaagcttgtttcagttagtgg |
629 |
Q |
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| T |
717599 |
tgatgcatgcgttgctgctggattacaggttaagcagaagcttgtttcagttagtgg |
717655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 495
Target Start/End: Original strand, 26942185 - 26942214
Alignment:
| Q |
466 |
aacatatgtgcaggtattgaaactgttcaa |
495 |
Q |
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| T |
26942185 |
aacatatgtgcaggtattgaaactgttcaa |
26942214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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