View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0600-Insertion-9 (Length: 137)

Name: NF0600-Insertion-9
Description: NF0600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0600-Insertion-9
NF0600-Insertion-9
[»] chr8 (1 HSPs)
chr8 (90-137)||(3790859-3790906)
[»] chr7 (1 HSPs)
chr7 (90-137)||(12811296-12811343)
[»] chr4 (4 HSPs)
chr4 (90-137)||(1655048-1655095)
chr4 (90-137)||(9129107-9129154)
chr4 (90-137)||(37152705-37152752)
chr4 (90-137)||(45223022-45223069)
[»] chr1 (2 HSPs)
chr1 (90-137)||(23780976-23781023)
chr1 (90-137)||(52635920-52635967)


Alignment Details
Target: chr8 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 3790859 - 3790906
Alignment:
Q  90 aaatgggttcaggatatgctgaagatttatatagctgggtttccatga 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3790859 aaatgggttcatgatatgctgaagatttatatagctgggtttccatga 3790906  T

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Target: chr7 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 12811296 - 12811343
Alignment:
Q  90 aaatgggttcaggatatgctgaagatttatatagctgggtttccatga 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12811296 aaatgggttcatgatatgctgaagatttatatagctgggtttccatga 12811343  T

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Target: chr4 (Bit Score: 44; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 1655095 - 1655048
Alignment:
Q  90 aaatgggttcaggatatgctgaagatttatatagctgggtttccatga 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1655095 aaatgggttcatgatatgctgaagatttatatagctgggtttccatga 1655048  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 9129107 - 9129154
Alignment:
Q  90 aaatgggttcaggatatgctgaagatttatatagctgggtttccatga 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9129107 aaatgggttcatgatatgctgaagatttatatagctgggtttccatga 9129154  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 37152752 - 37152705
Alignment:
Q  90 aaatgggttcaggatatgctgaagatttatatagctgggtttccatga 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37152752 aaatgggttcatgatatgctgaagatttatatagctgggtttccatga 37152705  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 45223069 - 45223022
Alignment:
Q  90 aaatgggttcaggatatgctgaagatttatatagctgggtttccatga 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45223069 aaatgggttcatgatatgctgaagatttatatagctgggtttccatga 45223022  T

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Target: chr1 (Bit Score: 44; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 23781023 - 23780976
Alignment:
Q  90 aaatgggttcaggatatgctgaagatttatatagctgggtttccatga 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23781023 aaatgggttcatgatatgctgaagatttatatagctgggtttccatga 23780976  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 52635920 - 52635967
Alignment:
Q  90 aaatgggttcaggatatgctgaagatttatatagctgggtttccatga 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52635920 aaatgggttcatgatatgctgaagatttatatagctgggtttccatga 52635967  T

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