View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0601_high_13 (Length: 337)

Name: NF0601_high_13
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0601_high_13
NF0601_high_13
[»] chr8 (7 HSPs)
chr8 (96-216)||(25391969-25392092)
chr8 (261-337)||(25358820-25358896)
chr8 (261-337)||(25392139-25392215)
chr8 (239-320)||(25650621-25650707)
chr8 (96-167)||(25617867-25617938)
chr8 (254-286)||(25617952-25617984)
chr8 (188-216)||(25358745-25358773)
[»] scaffold0466 (3 HSPs)
scaffold0466 (239-337)||(6521-6619)
scaffold0466 (96-148)||(7737-7789)
scaffold0466 (168-216)||(6660-6708)
[»] scaffold1041 (2 HSPs)
scaffold1041 (241-292)||(605-656)
scaffold1041 (115-176)||(708-778)
[»] chr1 (1 HSPs)
chr1 (259-326)||(32973771-32973838)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 25391969 - 25392092
Alignment:
Q  96 gtgtatgcataatttgaaaagagacataa-taatgt--ggattatccattccctcatagatatctttaagtcatcgaggtgataagacctctgtgttgtc 192  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  25391969 gtgtatgcataatttgaaaagagacataaataatgtatggattatccattccctcatagatatctttaagtcatcaaggtgataagagctctgtgttgtc 25392068  T
Q  193 atagtggtatgaatactacatgtg 216  Q
    ||||||||||||||||||||||||    
T  25392069 atagtggtatgaatactacatgtg 25392092  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 25358820 - 25358896
Alignment:
Q  261 ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctc 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25358820 ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacatctc 25358896  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 25392139 - 25392215
Alignment:
Q  261 ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctc 337  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  25392139 ttgttcaacttctctaaatttttcttcttcaaattctggaagaaaaccgtattccttttggtgagtaataacgtctc 25392215  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 25650621 - 25650707
Alignment:
Q  239 acaattttggtaagtgtgacactt-----gttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattcctttta 320  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25650621 acaattttggtaagtgtgacacttagcttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattcctttta 25650707  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 25617867 - 25617938
Alignment:
Q  96 gtgtatgcataatttgaaaagagacataataatgtggattatccattccctcatagatatctttaagtcatc 167  Q
    |||||||||||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||    
T  25617867 gtgtatgcataatttgaagagagacataataatgcgaagtatccattccctcatagatatctttaagtcatc 25617938  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 25617952 - 25617984
Alignment:
Q  254 gtgacacttgttcaacttctctaaatttttctt 286  Q
    |||||||||||||||||||||||||||||||||    
T  25617952 gtgacacttgttcaacttctctaaatttttctt 25617984  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 25358745 - 25358773
Alignment:
Q  188 ttgtcatagtggtatgaatactacatgtg 216  Q
    |||||||||||||||||||||||||||||    
T  25358745 ttgtcatagtggtatgaatactacatgtg 25358773  T

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Target: scaffold0466 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 239 - 337
Target Start/End: Complemental strand, 6619 - 6521
Alignment:
Q  239 acaattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctc 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  6619 acaattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaaattcttgaaggaaaccgtattcctttgagtgagtaataacgtctc 6521  T

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Target: scaffold0466; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 7789 - 7737
Alignment:
Q  96 gtgtatgcataatttgaaaagagacataataatgtggattatccattccctca 148  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7789 gtgtatgcataatttgaagagagacataataatgtggattatccattccctca 7737  T

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Target: scaffold0466; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 6708 - 6660
Alignment:
Q  168 gaggtgataagacctctgtgttgtcatagtggtatgaatactacatgtg 216  Q
    |||||||||||| || ||||||||||||||| |||| ||||||| ||||    
T  6708 gaggtgataagagctatgtgttgtcatagtgatatggatactacgtgtg 6660  T

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Target: scaffold1041 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 656 - 605
Alignment:
Q  241 aattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaa 292  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  656 aattttggtaagcgtgacacttgttcaacttctctaaatttttcttcttcaa 605  T

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Target: scaffold1041; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 778 - 708
Alignment:
Q  115 agagacataataatgtggattatcc---------attccctcatagatatctttaagtcatcgaggtgata 176  Q
    |||||||||||||||||||||||||         ||| ||||||||| |||||||||||||||||||||||    
T  778 agagacataataatgtggattatccatttcctcaatttcctcatagagatctttaagtcatcgaggtgata 708  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 32973838 - 32973771
Alignment:
Q  259 acttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagt 326  Q
    ||||||| ||| |||||| || ||||||||||||||| ||||| ||||  ||||||||||| ||||||    
T  32973838 acttgttgaacgtctctagatgtttcttcttcaaattatggaaagaaattgtattcctttttgtgagt 32973771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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