View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0601_high_20 (Length: 309)

Name: NF0601_high_20
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0601_high_20
NF0601_high_20
[»] chr1 (16 HSPs)
chr1 (11-295)||(13244659-13244943)
chr1 (50-271)||(30368270-30368491)
chr1 (129-271)||(13271474-13271616)
chr1 (128-256)||(12964052-12964180)
chr1 (45-264)||(13085911-13086130)
chr1 (52-271)||(13100812-13101030)
chr1 (50-271)||(13007009-13007230)
chr1 (50-271)||(13204268-13204489)
chr1 (120-271)||(13070338-13070489)
chr1 (120-271)||(13094278-13094429)
chr1 (120-271)||(13129707-13129858)
chr1 (120-271)||(13161400-13161551)
chr1 (128-271)||(19279330-19279473)
chr1 (45-259)||(13081039-13081253)
chr1 (178-271)||(13065375-13065468)
chr1 (129-207)||(13010661-13010739)
[»] chr6 (1 HSPs)
chr6 (162-251)||(31380253-31380342)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 13244943 - 13244659
Alignment:
Q  11 cacagacacaacatgcatcacacttacaactttgttatatcaaatgcatcttttactgacttcgacctttaagccgtgcttcatgcgaacgacaatagaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13244943 cacagacacaacatgcatcacacttacaactttgttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaa 13244844  T
Q  111 gttctcagcgttacagggtgaccttccaccacctttatgcgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcc 210  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244843 gttctcagcgttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcc 13244744  T
Q  211 caatacaacttctaggacctgcattgaatgctatgaacttgtaagacggtacatttataatccctcctctcgatgatgtccatct 295  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||    
T  13244743 caatacaacttctaggacctgcattgaaagctatgaacttgtaagacggtacatttataatccctcctctagctgatatccatct 13244659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 50 - 271
Target Start/End: Complemental strand, 30368491 - 30368270
Alignment:
Q  50 tcaaatgcatcttttactgacttcgacctttaagccgtgcttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacctttatg 149  Q
    |||||||||||||||| | || | ||| || ||||| || ||||| | || ||||| |||||  ||  | |||||||||||||||||||| |||| ||||    
T  30368491 tcaaatgcatcttttagtaaccttgacgttcaagccatgtttcattcaaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg 30368392  T
Q  150 cgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaatgctatgaact 249  Q
     |||||||||| ||||| | |||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| |||| |||||| ||||||||||    
T  30368391 tgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaact 30368292  T
Q  250 tgtaagacggtacatttataat 271  Q
    ||||||| ||||||| ||||||    
T  30368291 tgtaagatggtacatgtataat 30368270  T

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Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 129 - 271
Target Start/End: Original strand, 13271474 - 13271616
Alignment:
Q  129 tgaccttccaccacctttatgcgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggac 228  Q
    |||||||||||||| | |||| |||||||||| || | ||||||||||||||||||||||||||  ||||||| ||||||||||| ||| ||||||||||    
T  13271474 tgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttcccaagacagcttctaggac 13271573  T
Q  229 ctgcattgaatgctatgaacttgtaagacggtacatttataat 271  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  13271574 ctgcattgaatgctatgaacttgtaagatggtacatgtataat 13271616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 12964180 - 12964052
Alignment:
Q  128 gtgaccttccaccacctttatgcgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctagga 227  Q
    ||||||||||||||| | |||| ||||||||||||||| |  ||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  12964180 gtgaccttccaccacttctatgtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 12964081  T
Q  228 cctgcattgaatgctatgaacttgtaaga 256  Q
    ||||||||||||||||||||||| |||||    
T  12964080 cctgcattgaatgctatgaacttataaga 12964052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 45 - 264
Target Start/End: Original strand, 13085911 - 13086130
Alignment:
Q  45 ttatatcaaatgcatcttttactgacttcgacctttaagccgtgcttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacct 144  Q
    ||||||||||| ||||||||||| |||| ||| || || || || | |||||| |  |||||||||  |||  | |||||||  ||||||||||| || |    
T  13085911 ttatatcaaattcatcttttactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaactt 13086010  T
Q  145 ttatgcgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaatgctat 244  Q
     |||| |||||||||| |||| || |||||||||||||||||||||||| | ||||| ||||||||||| |||||||| |||||||||||| ||||||||    
T  13086011 gtatgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctat 13086110  T
Q  245 gaacttgtaagacggtacat 264  Q
    ||||||| |||| |||||||    
T  13086111 gaacttgcaagatggtacat 13086130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 271
Target Start/End: Original strand, 13100812 - 13101030
Alignment:
Q  52 aaatgcatcttttactgacttcgacctttaagccgtgcttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacctttatgcg 151  Q
    |||||||||||||| |||||| |||||| ||||| || |||||| |||  |||| ||||    || | |||| |||||||||||||||||||| |||| |    
T  13100812 aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg 13100911  T
Q  152 aaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaatgctatgaacttg 251  Q
    |||||||   ||||||| |||||| ||||| |||||||||| |||||||| ||| || || |||||||||||||| |||| |||||| ||||||||||||    
T  13100912 aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggtcctg-attgaaagctatgaacttg 13101010  T
Q  252 taagacggtacatttataat 271  Q
    ||||| ||||||| ||||||    
T  13101011 taagatggtacatgtataat 13101030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 271
Target Start/End: Original strand, 13007009 - 13007230
Alignment:
Q  50 tcaaatgcatcttttactgacttcgacctttaagccgtgcttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacctttatg 149  Q
    |||||||||||||||| ||||||  ||||| ||||| || |||||| |||  |||| ||||    || | |||| |||||||||| ||||||||||||||    
T  13007009 tcaaatgcatcttttagtgactttaaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgacctgccaccacctttatg 13007108  T
Q  150 cgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaatgctatgaact 249  Q
     |||||||    |||||||  ||||| ||||| |||||||||| |||||||| ||| || || ||||||||||||||||||| |||||| ||||||||||    
T  13007109 tgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggacctgtattgaaagctatgaact 13007208  T
Q  250 tgtaagacggtacatttataat 271  Q
    ||||||| ||||||| ||||||    
T  13007209 tgtaagatggtacatgtataat 13007230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 271
Target Start/End: Original strand, 13204268 - 13204489
Alignment:
Q  50 tcaaatgcatcttttactgacttcgacctttaagccgtgcttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacctttatg 149  Q
    |||||||||||||||| ||||||  |||||||| || |  |||||| |||  |||| |||| |  |  | |||||||||||||||||||| | |||||||    
T  13204268 tcaaatgcatcttttagtgactttaacctttaaaccatatttcatgtgaagaacaaaagaaatctttggggttacagggtgaccttccactatctttatg 13204367  T
Q  150 cgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaatgctatgaact 249  Q
     |||| |||   ||||||| |||||| ||||| |||||||||| ||| ||||||||||| || | ||||||||||||||||| |||||| ||||||||||    
T  13204368 tgaaaattctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctaggacctgtattgaaagctatgaact 13204467  T
Q  250 tgtaagacggtacatttataat 271  Q
    ||||||| ||||||| ||||||    
T  13204468 tgtaagatggtacatgtataat 13204489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 120 - 271
Target Start/End: Complemental strand, 13070489 - 13070338
Alignment:
Q  120 gttacagggtgaccttccaccacctttatgcgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaac 219  Q
    ||||||||||||||||||||||||| |||| ||||||||   ||||||| |||||| ||||| |||||||||| ||| ||||||||||| || | |||||    
T  13070489 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaac 13070390  T
Q  220 ttctaggacctgcattgaatgctatgaacttgtaagacggtacatttataat 271  Q
    |||| ||||||| |||||| ||||||||||||||||| || |||| ||||||    
T  13070389 ttctcggacctgtattgaaagctatgaacttgtaagatggaacatgtataat 13070338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 120 - 271
Target Start/End: Original strand, 13094278 - 13094429
Alignment:
Q  120 gttacagggtgaccttccaccacctttatgcgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaac 219  Q
    ||||||||||||||||||||||||| |||| |||||||||  ||||||| |||||| ||||| |||||||||| ||| |||| |||||| || ||||||     
T  13094278 gttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatacaaa 13094377  T
Q  220 ttctaggacctgcattgaatgctatgaacttgtaagacggtacatttataat 271  Q
    |||| || ||||  ||||| ||||||||||||||||| ||||||| ||||||    
T  13094378 ttctgggtcctgtgttgaaagctatgaacttgtaagatggtacatgtataat 13094429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 271
Target Start/End: Original strand, 13129707 - 13129858
Alignment:
Q  120 gttacagggtgaccttccaccacctttatgcgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaac 219  Q
    ||||||||||||||||||||||||| |||| ||||||||   ||||||| |||||| ||||| |||||||||| ||| ||||||||||| || ||||||     
T  13129707 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13129806  T
Q  220 ttctaggacctgcattgaatgctatgaacttgtaagacggtacatttataat 271  Q
    |||| || ||||  ||||| |||| |||||||||||| ||||||| ||||||    
T  13129807 ttctgggtcctgtgttgaaagctacgaacttgtaagatggtacatgtataat 13129858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 271
Target Start/End: Original strand, 13161400 - 13161551
Alignment:
Q  120 gttacagggtgaccttccaccacctttatgcgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaac 219  Q
    |||||| |||||||||||||||||| |||| |||||||||  ||||||| |||||| ||||| |||||||||| ||| ||||||||||| || ||||||     
T  13161400 gttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13161499  T
Q  220 ttctaggacctgcattgaatgctatgaacttgtaagacggtacatttataat 271  Q
    |||| || ||||  ||||| | ||||||||||||||| ||||||| ||||||    
T  13161500 ttctgggtcctgtgttgaaagatatgaacttgtaagaaggtacatgtataat 13161551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 19279473 - 19279330
Alignment:
Q  128 gtgaccttccaccacctttatgcgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctagga 227  Q
    |||||||||||| |||| ||||||||||||||| || | || ||||||||||||||||||||||| |||  ||| |||||| || | ||| ||||| |||    
T  19279473 gtgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcgga 19279374  T
Q  228 cctgcattgaatgctatgaacttgtaagacggtacatttataat 271  Q
    |||||||| || |||||||||||||| || ||||||| ||||||    
T  19279373 cctgcattaaacgctatgaacttgtacgatggtacatgtataat 19279330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 259
Target Start/End: Complemental strand, 13081253 - 13081039
Alignment:
Q  45 ttatatcaaatgcatcttttactgacttcgacctttaagccgtgcttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacct 144  Q
    ||||||||||||||||||||||  | || |||||| ||||| || | |||||||| || |||||||   ||  |  |||  | |||||||||||||||||    
T  13081253 ttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccctaggaattattgagtgaccttccaccacct 13081154  T
Q  145 ttatgcgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaatgctat 244  Q
      ||| |||||||  | || |  | |||||||||||||||||||||||  || |||| ||||||||||| ||| ||||| ||||||||||| || |||||    
T  13081153 gaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttggacctgcattaaacgctat 13081054  T
Q  245 gaacttgtaagacgg 259  Q
    |||||| ||||||||    
T  13081053 gaacttataagacgg 13081039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 13065468 - 13065375
Alignment:
Q  178 ccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaatgctatgaacttgtaagacggtacatttataat 271  Q
    |||| ||||||| ||||||| | | |||||| || | ||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||    
T  13065468 ccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatgaacttgtaagacggtacatgtataat 13065375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 13010661 - 13010739
Alignment:
Q  129 tgaccttccaccacctttatgcgaaacttccacaacaaagaagctgcaaccattttcatttgaacgaagctaagatctt 207  Q
    |||||||||||||| | ||||||||| ||||| ||||||  |||||| ||||| |||||| ||| ||| ||||||||||    
T  13010661 tgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatcttcattagaatgaaactaagatctt 13010739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 31380342 - 31380253
Alignment:
Q  162 aacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaatgctatgaacttg 251  Q
    ||||||||||| |||  ||| || ||||||| ||| ||||||||||| |||||||||||||  || |||| |||||| | ||||||||||    
T  31380342 aacaaagaagccgcagacatcttaatttgaatgaaactaagatctttaccaatacaacttccgggtcctgtattgaaagatatgaacttg 31380253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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