View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0601_high_27 (Length: 291)
Name: NF0601_high_27
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_high_27 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
| [»] scaffold0466 (2 HSPs) |
| |
|
| [»] scaffold1041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 25359306 - 25359022
Alignment:
| Q |
9 |
agcagagatcataagattattttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
104 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25359306 |
agcagagatcataagatt-ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
25359208 |
T |
|
| Q |
105 |
tatgaattaactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaataaatctccaaaaataattgtgtgaaaaacaccacaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||| ||||| |
|
|
| T |
25359207 |
tatgaattaactaccaaaataattgttggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaa |
25359108 |
T |
|
| Q |
205 |
gatgcatagagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttga |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25359107 |
gatgcatagagtggaagaaattctagaatatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttga |
25359022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 25399339 - 25399055
Alignment:
| Q |
9 |
agcagagatcataagattattttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
104 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25399339 |
agcagagatcataagatt-ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
25399241 |
T |
|
| Q |
105 |
tatgaattaactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaataaatctccaaaaataattgtgtgaaaaacaccacaa |
204 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||| ||||| |
|
|
| T |
25399240 |
tatgaattaactaccaaaataattattggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaa |
25399141 |
T |
|
| Q |
205 |
gatgcatagagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttga |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25399140 |
gatgcatagagtggaagaaattctagaatatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttga |
25399055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 113 - 291
Target Start/End: Complemental strand, 25618243 - 25618066
Alignment:
| Q |
113 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaataaatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
212 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
25618243 |
aactaccaaaataattgtgggtttaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtatgtgaaaaacaccacaagatgcata |
25618144 |
T |
|
| Q |
213 |
gagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttga |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25618143 |
gagtggaagaaattctagaatatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttga |
25618066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 113 - 291
Target Start/End: Complemental strand, 25650968 - 25650791
Alignment:
| Q |
113 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaataaatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
212 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
25650968 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaataccgcaagatgcata |
25650869 |
T |
|
| Q |
213 |
gagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttga |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25650868 |
gagtggaagaaattctagaatatcacacttga-gggtcgcatatgttcatattttggacgataagaaagccaaacttga |
25650791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 25495136 - 25495042
Alignment:
| Q |
113 |
aactaccaaaataattgttga-ttgaagttgtggcgtgtgtagtctaattaactaataaatctccaaaaataattgtgtgaaaaacaccacaaga |
206 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
25495136 |
aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
25495042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 25495366 - 25495282
Alignment:
| Q |
28 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
116 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495366 |
ttttttcaagaataacaaaggtacaatcgagagaaccagcttgcagataa----aagctatatggacgtaccgaggatatgaattaact |
25495282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 25651318 - 25651231
Alignment:
| Q |
25 |
ttattttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
116 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
25651318 |
ttattttttcaagaataacaaaggtactatcgagagaaccagcttgcaga----taaaagctatatggacgtaccgaagatgtgaattaact |
25651231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 113 - 291
Target Start/End: Original strand, 6221 - 6398
Alignment:
| Q |
113 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaataaatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
212 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
6221 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaagatgcata |
6320 |
T |
|
| Q |
213 |
gagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttga |
291 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6321 |
gagtggaagaaattctagattatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttga |
6398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 5996 - 6070
Alignment:
| Q |
38 |
aataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
116 |
Q |
| |
|
|||||||||| || || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5996 |
aataacaaaggtaaaatcgagagaaccagcttacagataa----aagctatatggacgtaccgaggatatgaattaact |
6070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 322 - 426
Alignment:
| Q |
9 |
agcagagatcataagattatttt-ttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatat |
107 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
322 |
agcagagatcataagtttttttttttcaagaataacaaagctattatggagagaaccagcttgcaga----taaaagctatatggacgtaccgaggatat |
417 |
T |
|
| Q |
108 |
gaattaact |
116 |
Q |
| |
|
| ||||||| |
|
|
| T |
418 |
ggattaact |
426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13 times since January 2019
Visitors: 3831