View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0601_high_5 (Length: 490)

Name: NF0601_high_5
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0601_high_5
NF0601_high_5
[»] chr4 (8 HSPs)
chr4 (28-483)||(46890218-46890673)
chr4 (28-159)||(46872926-46873057)
chr4 (221-312)||(46873089-46873180)
chr4 (28-118)||(46863673-46863763)
chr4 (403-483)||(46873181-46873261)
chr4 (45-133)||(46898788-46898876)
chr4 (358-429)||(46899152-46899223)
chr4 (252-348)||(46899013-46899109)
[»] chr3 (1 HSPs)
chr3 (358-429)||(19845978-19846049)


Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 28 - 483
Target Start/End: Original strand, 46890218 - 46890673
Alignment:
Q  28 acattttctacaaaacacgaatttgtactaagttcagatttggtacttgtagaaacggacaaaattgcaactttgctcatggagctgaagagataaggca 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46890218 acattttctacaaaacacgaatttgtactaagttcagatttggtacttgtagaaacggacaaaattgcaactttgctcatggagctgaagagttaaggca 46890317  T
Q  128 accaccaccacattggcagaagttagttggtctgcgtagcgaaggtcggatgcagctgggaaatcatggtgaagatnnnnnnntcatacaaacgatgaaa 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||       |||||||||| ||||||    
T  46890318 accaccaccacattggcagaagttagttggtctgcgtagcgaaggtcggatgcagctgggaaatcatgctaaagataaaaaaatcatacaaacaatgaaa 46890417  T
Q  228 ctgtgcaagaattattggaatgaggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttagggatgattccttgaaat 327  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46890418 ctgtgcaagaattattgcaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttagggatgattccttgaaat 46890517  T
Q  328 cgagagagtgctccgcaataaccattgaaactaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtg 427  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46890518 tgagagagtgctccgcaataaccattgaaactaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtg 46890617  T
Q  428 tcgcaattggaagcatacaggatattgttcctttggaatgaactgtctctctgctc 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46890618 tcgcaattggaagcatacaggatattgttcctttggaatgaactgtctctttgctc 46890673  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 46872926 - 46873057
Alignment:
Q  28 acattttctacaaaacacgaatttgtactaagttcagatttggtacttgtagaaacggacaaaattgcaactttgctcatggagctgaagagataaggca 127  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||||| |||||||||||||||||    
T  46872926 acattttctacaaaacacggatttgtactaagttcatatttggtgcttgtagaaacggaacaaattgcaactttgctcatggggctgaagagataaggca 46873025  T
Q  128 accaccaccacattggcagaagttagttggtc 159  Q
    |||||| ||| ||| ||||||| |||||||||    
T  46873026 accacctccaaattcgcagaagctagttggtc 46873057  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 46873089 - 46873180
Alignment:
Q  221 gatgaaactgtgcaagaattattggaatgaggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttaggg 312  Q
    |||||||||||||||||| ||||| |||| |||| ||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  46873089 gatgaaactgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggg 46873180  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 46863673 - 46863763
Alignment:
Q  28 acattttctacaaaacacgaatttgtactaagttcagatttggtacttgtagaaacggacaaaattgcaactttgctcatggagctgaaga 118  Q
    ||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||  || ||||||||||||||||||| | ||||||    
T  46863673 acattttctacaagactcgaatctgtactaagttcaggtttggtacttgtagaaacggtaaagattgcaactttgctcatggggttgaaga 46863763  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 403 - 483
Target Start/End: Original strand, 46873181 - 46873261
Alignment:
Q  403 gcacttatcggaagactaagctgtgtcgcaattggaagcatacaggatattgttcctttggaatgaactgtctctctgctc 483  Q
    ||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||||||| ||| |||| || |||||    
T  46873181 gcacttatcggaagactaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctc 46873261  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 46898788 - 46898876
Alignment:
Q  45 cgaatttgtactaagttcagatttggtacttgtagaaacggacaaaattgcaactttgctcatggagctgaagagataaggcaaccacc 133  Q
    ||||| || ||||||||||| ||||||||||||||||||||  ||||||||||||  ||||| || ||||| ||||||||||| |||||    
T  46898788 cgaatctgcactaagttcaggtttggtacttgtagaaacggtgaaaattgcaactacgctcacggggctgatgagataaggcagccacc 46898876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 46899152 - 46899223
Alignment:
Q  358 ctaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtc 429  Q
    |||| |||||||||||||  |||||| ||||||||| |||||||||  ||||| ||||||||||||||||||    
T  46899152 ctaacaatttggaaggcattagggctgtgaacaagccagcaaggagtgcttattggaagactaagctgtgtc 46899223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 348
Target Start/End: Original strand, 46899013 - 46899109
Alignment:
Q  252 gaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttagggatgattccttgaaatcgagagagtgctccgcaataa 348  Q
    ||||||||||| ||||| ||||| ||||  || |||||||| ||||||||   ||||||||||| ||| | |||| | |||||||| || |||||||    
T  46899013 gaggaatgtccttatggtgataagtgtagctttcttcatgaggatcctgctaggtttagggatgcttcttggaaaacaagagagtgttctgcaataa 46899109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 19845978 - 19846049
Alignment:
Q  358 ctaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtc 429  Q
    |||||||||||||||| |  ||| || ||||||||| ||||||| |||||||  |||||| |||||||||||    
T  19845978 ctaataatttggaaggaaataggtctgtgaacaagccagcaaggggcacttactggaagattaagctgtgtc 19846049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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