View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_high_7 (Length: 481)
Name: NF0601_high_7
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 17892357 - 17892728
Alignment:
| Q |
16 |
atggactttctagctcaaaactacacgggttttggttcattattataacatgtataataatcatgtaacttactaattaggttcaatgttttcaaccata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17892357 |
atggactttctagctcaaaactacacgggttttggttcattattataacatgtataataatcatgtaacttactaattaggttcattgttttcaaccata |
17892456 |
T |
|
| Q |
116 |
tacaaatgaatattatatgcataatctaattaaaatgcaaaccaaattttaaacattaccaacatattgacaatgattgcaatgacgattcaatgctgcc |
215 |
Q |
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| T |
17892457 |
tacaaatgaatattatatgtataatctaattaaaatgcaaaccaaattttaaacattaccaacatattgacaatgattgcaatgacgattcaatgctgcc |
17892556 |
T |
|
| Q |
216 |
tcaattgattcttcaatcacaaacaacaaaatatacaaaggtggatgatgatgcaattcaagttgaaatgaccacataggcattcccatttttaaattac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17892557 |
tcaattgattcttcaatcacaaacaacaaaatatacaaaggtggatgatgattcaattcaagttgaaatgaccacataggcattcccatttttaaattac |
17892656 |
T |
|
| Q |
316 |
tttccaaatttgcatattcaagtaaaccattcacattctcacgaaatgatcctccattaaacattaatgggt |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17892657 |
tttccaaatttgcatattcaagtaaaccattcacattctcacgaaatgatgctccattaaacattaatgggt |
17892728 |
T |
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