View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0601_high_9 (Length: 423)

Name: NF0601_high_9
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0601_high_9
NF0601_high_9
[»] chr4 (3 HSPs)
chr4 (30-414)||(14353225-14353612)
chr4 (253-297)||(18463344-18463388)
chr4 (260-305)||(14477941-14477986)
[»] scaffold0125 (2 HSPs)
scaffold0125 (253-414)||(17760-17923)
scaffold0125 (260-414)||(6903-7038)
[»] chr2 (6 HSPs)
chr2 (259-414)||(30212030-30212187)
chr2 (253-334)||(20005635-20005716)
chr2 (253-334)||(36734093-36734174)
chr2 (266-334)||(28344656-28344724)
chr2 (253-334)||(23801718-23801799)
chr2 (266-334)||(45536232-45536300)
[»] chr1 (3 HSPs)
chr1 (263-414)||(20707719-20707872)
chr1 (260-334)||(34393123-34393197)
chr1 (250-294)||(1643434-1643478)
[»] chr8 (5 HSPs)
chr8 (260-414)||(22707981-22708137)
chr8 (260-323)||(21678486-21678548)
chr8 (260-326)||(23884492-23884558)
chr8 (260-323)||(21676140-21676202)
chr8 (260-334)||(20516651-20516725)
[»] chr6 (5 HSPs)
chr6 (253-414)||(3006524-3006687)
chr6 (252-326)||(31166557-31166631)
chr6 (260-333)||(18459588-18459661)
chr6 (266-334)||(1816849-1816917)
chr6 (260-324)||(1819321-1819385)
[»] scaffold1434 (1 HSPs)
scaffold1434 (260-414)||(1016-1172)
[»] chr3 (6 HSPs)
chr3 (260-414)||(6003424-6003579)
chr3 (266-334)||(3526825-3526893)
chr3 (270-334)||(48631644-48631708)
chr3 (266-324)||(25202478-25202536)
chr3 (260-334)||(48043122-48043195)
chr3 (266-326)||(12917044-12917104)
[»] chr7 (5 HSPs)
chr7 (253-414)||(21661495-21661658)
chr7 (260-334)||(33060747-33060821)
chr7 (266-334)||(42565129-42565197)
chr7 (260-334)||(38300106-38300180)
chr7 (260-326)||(33555736-33555802)
[»] scaffold1102 (1 HSPs)
scaffold1102 (260-334)||(1622-1696)
[»] scaffold0048 (1 HSPs)
scaffold0048 (260-334)||(68400-68473)
[»] chr5 (2 HSPs)
chr5 (260-334)||(19227366-19227440)
chr5 (260-409)||(21404326-21404466)
[»] scaffold0205 (1 HSPs)
scaffold0205 (278-334)||(5311-5367)
[»] scaffold1939 (1 HSPs)
scaffold1939 (260-334)||(484-559)
[»] scaffold0217 (1 HSPs)
scaffold0217 (260-326)||(29020-29086)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 30 - 414
Target Start/End: Original strand, 14353225 - 14353612
Alignment:
Q  30 cttcaccctcacacaccacagccaatctagatgacatgccttaagaagtgtctacaaaaatctagataaagctttacctccatcaccatccaccaaacct 129  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14353225 cttcaccctcacacaccacaaccaatctagatgacatgccttaagaagtgtctacaaaaatctagataaagctttacccccatcaccatccaccaaacct 14353324  T
Q  130 caaccagagtctgacaacttgaaaggaaaagaatttgatgatttcgttgttaagcttattcaagccctacatcctgatggagaaactgctattttccctc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14353325 caaccagagtctgacaacttgaaaggaaaagaatttgatgatttcgttgttaagcttattcaagccctacatcctgatggagaaactgctattttccctc 14353424  T
Q  230 catacttagatgtagatgctaggtgtaaaaccctaatttattatttagtta-ttttatcgagtttagtgtcattttgaacaatttatgtgaataattgcg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14353425 catacttagatgtagatgctaggtgtaaaaccctaatttattatttagttatttttatcgagtttagtgtcattttgaacaatttatgtgaataattgcg 14353524  T
Q  329 atgtgtgatg--ttgtgttatgtgttggtgaatattagtagcttattatagtattattagtgaaagaataaaattaaactagaataat 414  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14353525 atgtgtgatgttttgtgttatgtgttggtgaatattagtagcttattatagtattattagtgaaagaataaaattaaaatagaataat 14353612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 18463388 - 18463344
Alignment:
Q  253 tgtaaaaccctaatttattatttagttattttatcgagtttagtg 297  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||||    
T  18463388 tgtaacaccctattttattatttatttattttatcgagtttagtg 18463344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 14477986 - 14477941
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttg 305  Q
    ||||| ||||||||||| |||||||||||| ||||||||| |||||    
T  14477986 ccctattttattatttatttattttatcgaatttagtgtctttttg 14477941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 253 - 414
Target Start/End: Original strand, 17760 - 17923
Alignment:
Q  253 tgtaaaaccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgtgatg--ttgtgttatgtg 350  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  17760 tgtaacaccctaatttattatttagttattttatcgagtttagtgtcatttggaataatttatgtgaataattgcgatgtgtgatgttttgtgttatgtg 17859  T
Q  351 ttggtgaatattagtagcttattatagtattattagtgaaagaataaaattaaactagaataat 414  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  17860 ttgttgaatattagtagcttattatagtattattagtgaaggaataaaattaaaatagaataat 17923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 260 - 414
Target Start/End: Original strand, 6903 - 7038
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgtgatgttgtgttatgtgttggtgaat 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||                   |||||||||||||||    
T  6903 ccctaatttattatttagttattttatcgagtttagtgtcattttgaataatttatgtgaataatt-------------------tatgtgttggtgaat 6983  T
Q  360 attagtagcttattatagtattattagtgaaagaataaaattaaactagaataat 414  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  6984 attagtagcttattatagtattattagtgaaggaataaaattaaaatagaataat 7038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 259 - 414
Target Start/End: Original strand, 30212030 - 30212187
Alignment:
Q  259 accctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgtgatg--ttgtgttatgtgttggtg 356  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  ||||||||||||||||||    
T  30212030 acccttatttattatttagttattttatcgagtttagtgtcattttgaataatttatgtgaataattgcgatgtctgatgttttgtgttatgtgttggtg 30212129  T
Q  357 aatattagtagcttattatagtattattagtgaaagaataaaattaaactagaataat 414  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30212130 aatattagtagcttattatagtattattagtgaatgaataaaattaaaatagaataat 30212187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 20005635 - 20005716
Alignment:
Q  253 tgtaaaaccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  20005635 tgtaacaccctattttattatttatttattttatcgagtttagtgtctttttgtataatttatttgaataattgtgatgtgt 20005716  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 36734093 - 36734174
Alignment:
Q  253 tgtaaaaccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  36734093 tgtaacaccctattttattatttatttattttatcgagtttagtgtctttttgtataatttatttgaataattgtgatgtgt 36734174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 28344656 - 28344724
Alignment:
Q  266 tttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  28344656 tttattatttatttattttatcgagtttagtgtctttttgtataatttatttgaataattgtgatgtgt 28344724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 23801799 - 23801718
Alignment:
Q  253 tgtaaaaccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| |||||| ||||||||||| ||||||||| |||||||||||| ||||| | ||| ||| |||||||||| |||||||    
T  23801799 tgtaacaccctattttattatttatttattttattgagtttagtgtctttttgtataatgtatttgaataattgtgatgtgt 23801718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 45536300 - 45536232
Alignment:
Q  266 tttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||||||||| |||||||||||||||||||||| ||||| | ||||||| ||| |||||| |||||||    
T  45536300 tttattatttatttattttatcgagtttagtgtctttttgtataatttatttgattaattgtgatgtgt 45536232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 263 - 414
Target Start/End: Original strand, 20707719 - 20707872
Alignment:
Q  263 taatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgtgatg--ttgtgttatgtgttggtgaata 360  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  20707719 taatttattatttatttattttatcgagtttagtgtcattttgaataatttatgtgaataattgcgatgtgtgatgttttgtgttatgtgttggtgaata 20707818  T
Q  361 ttagtagcttattatagtattattagtgaaagaataaaattaaactagaataat 414  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  20707819 ttagtagcttattatagtattattagtgaaggaataaaattaaaatagaataat 20707872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 34393197 - 34393123
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| ||||||||||| ||||||||| ||||||| |||  ||||| | ||||||| |||||||||| |||||||    
T  34393197 ccctattttattatttatttattttattgagtttaatgtttttttgtataatttatttgaataattgtgatgtgt 34393123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 1643478 - 1643434
Alignment:
Q  250 aggtgtaaaaccctaatttattatttagttattttatcgagttta 294  Q
    |||||||| |||||| ||||||||||| ||||||||| |||||||    
T  1643478 aggtgtaacaccctattttattatttatttattttattgagttta 1643434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 8e-65; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 260 - 414
Target Start/End: Original strand, 22707981 - 22708137
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgtgatg--ttgtgttatgtgttggtga 357  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  22707981 ccctaatttattatttagttattttatcgagtttattgtcattttgaataatttatgtgaataattgcgatgtgtgatgttttgtgttatatgttggtga 22708080  T
Q  358 atattagtagcttattatagtattattagtgaaagaataaaattaaactagaataat 414  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  22708081 atattagtagcttattatagtattattagtgaaggaataaaattaaaatagaataat 22708137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 21678486 - 21678548
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataa 323  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||    
T  21678486 ccctattttattattta-ttattttatcgagtttagtgtctttttgtataatttatttgaataa 21678548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 23884558 - 23884492
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattg 326  Q
    ||||| ||||||||||| |||||||||| ||||||||||| ||||  | ||||||| ||||||||||    
T  23884558 ccctattttattatttaattattttatctagtttagtgtctttttatataatttatttgaataattg 23884492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 21676140 - 21676202
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataa 323  Q
    ||||| ||||||||||| |||||||||| ||||||||||| ||||| | ||||||| |||||||    
T  21676140 ccctattttattattta-ttattttatcaagtttagtgtctttttgtataatttatatgaataa 21676202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 20516651 - 20516725
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| ||||||||||| ||||||||||||||||||| || |||   | ||||||| |||||||| | |||||||    
T  20516651 ccctattttattatttatttattttatcgagtttagtatcttttaatataatttatttgaataatggggatgtgt 20516725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 253 - 414
Target Start/End: Original strand, 3006524 - 3006687
Alignment:
Q  253 tgtaaaaccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgtgatg--ttgtgttatgtg 350  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  3006524 tgtaacaccctaatttattatttagttattttatggagtttagtgtcattttgaataatttatgtgaataattgcgatgtgtgatgttttgtgttatgtg 3006623  T
Q  351 ttggtgaatattagtagcttattatagtattattagtgaaagaataaaattaaactagaataat 414  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||    
T  3006624 ttggtgaatattagtagcttattatagtattattagtgaaggaatacaattaaaatataataat 3006687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 31166631 - 31166557
Alignment:
Q  252 gtgtaaaaccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattg 326  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||||| ||||| | ||||||  ||||||||||    
T  31166631 gtgtaacaccctattttattatttatttattttatcgagtttagtgtctttttgtataatttaattgaataattg 31166557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 18459661 - 18459588
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtg 333  Q
    ||||| ||||||||||| ||| |||||||||||||||||| ||||| | ||||||| |||||||||| ||||||    
T  18459661 ccctattttattatttatttactttatcgagtttagtgtctttttgtataatttatttgaataattgtgatgtg 18459588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 1816917 - 1816849
Alignment:
Q  266 tttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||||||||| |||||||||||||||||||||| ||||| | ||||||| | |||||| | |||||||    
T  1816917 tttattatttatttattttatcgagtttagtgtctttttgtataatttattttaataatggggatgtgt 1816849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 1819385 - 1819321
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataat 324  Q
    ||||| ||||||||||| || ||||||| ||||||||||| ||||| | ||||||| ||||||||    
T  1819385 ccctattttattatttatttgttttatcaagtttagtgtctttttgtataatttatttgaataat 1819321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1434 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold1434
Description:

Target: scaffold1434; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 260 - 414
Target Start/End: Original strand, 1016 - 1172
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgtgatg--ttgtgttatgtgttggtga 357  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  1016 ccctaatttattgtttagttattttatcgagtttagtgtcattttgaataatttatgtgaataattgcgatgtgtgatgttttgtgttatgtgttggtga 1115  T
Q  358 atattagtagcttattatagtattattagtgaaagaataaaattaaactagaataat 414  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  1116 atattagttgcttattatagaattattagtgaaggaataaaattaaaatagaataat 1172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 260 - 414
Target Start/End: Complemental strand, 6003579 - 6003424
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgtgatg--ttgtgttatgtgttggtga 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||  ||||||||| |||||||||    
T  6003579 ccctaatttattatttagttattttatcgagtttagtgtcattttgaataatttatgtgaataattacgatgtgtgatgttttgtgttatatgttggtga 6003480  T
Q  358 atattagtagcttattatagtattattagtgaaagaataaaattaaactagaataat 414  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  6003479 atattagtagcttattatagtaatattagtgaaggaataaaattaaa-tagaataat 6003424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 3526825 - 3526893
Alignment:
Q  266 tttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  3526825 tttattatttatttattttatcgagtttagtgtctttttgtataatttatttgaataattgtgatgtgt 3526893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 48631708 - 48631644
Alignment:
Q  270 ttatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  48631708 ttatttaattattttatcgagtttagtgtctttttgtataatttatttgaataattgtgatgtgt 48631644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 25202536 - 25202478
Alignment:
Q  266 tttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataat 324  Q
    ||||||||||| |||||||||||||||||||||| ||||| | ||||||| ||||||||    
T  25202536 tttattatttatttattttatcgagtttagtgtctttttgtataatttatttgaataat 25202478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 48043122 - 48043195
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||||   ||||||| |||||||| | |||||||    
T  48043122 ccctattttattattta-ttattttatcgagtttagtgtctttttgtttaatttatttgaataatggggatgtgt 48043195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 12917044 - 12917104
Alignment:
Q  266 tttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattg 326  Q
    ||||||||||| |||||||||||||||||||| | |||   | ||||||| ||||||||||    
T  12917044 tttattatttatttattttatcgagtttagtgccttttaatataatttatttgaataattg 12917104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 253 - 414
Target Start/End: Complemental strand, 21661658 - 21661495
Alignment:
Q  253 tgtaaaaccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgtgatg--ttgtgttatgtg 350  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| | ||||  ||||||||||||    
T  21661658 tgtaacaccctaatttattatttagttattttatcgagtttagtgtcattttgaataatttatgtgaataatggtgatgcgcgatgttttgtgttatgtg 21661559  T
Q  351 ttggtgaatattagtagcttattatagtattattagtgaaagaataaaattaaactagaataat 414  Q
    || |||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  21661558 ttagtgaatgttagtagcttattatagtattattagtgaaggaataaaattaaaatagaataat 21661495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 33060821 - 33060747
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  33060821 ccctattttattatttatttattttatcgagtttagtgtctttttgtataatttatttgaataattgtgatgtgt 33060747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 42565129 - 42565197
Alignment:
Q  266 tttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  42565129 tttattatttatttattttatcgagtttagtgtctttttgtataatttatttgaataattgtgatgtgt 42565197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 38300180 - 38300106
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| ||||||||||| ||||||||| |||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  38300180 ccctattttattatttatttattttattgagtttagtgtctttttgtataatttatttgaataattgtgatgtgt 38300106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 33555736 - 33555802
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattg 326  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||   | ||||||| ||||||||||    
T  33555736 ccctattttattatttatttattttatcgagtttagtgtcttttaatataatttatttgaataattg 33555802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 1622 - 1696
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| ||| ||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  1622 ccctattttgttatttatttattttatcgagtttagtgtctttttgcataatttatttgaataattgtgatgtgt 1696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 68400 - 68473
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  68400 ccctattttattatttatttattttatcgagtttagtgtc-ttttgtataatttatttgaataattgtgatgtgt 68473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 19227366 - 19227440
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| ||||||||||| ||||||||||||||||||| || ||||| | ||||||| |||||||||| |||||||    
T  19227366 ccctattttattatttatttattttatcgagtttagtttctttttgtataatttatttgaataattgtgatgtgt 19227440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 409
Target Start/End: Complemental strand, 21404466 - 21404326
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgtgatgttgtgttatgtgttggtgaat 359  Q
    ||||| ||||||||||| |||||||||| ||||||||||| ||| | | |||||||||||||||||          ||| |||||||| ||||||| | |    
T  21404466 ccctattttattatttatttattttatcaagtttagtgtcttttggcataatttatgtgaataatt----------atgatgtgttatatgttggtaatt 21404377  T
Q  360 attagtagcttattat-agtattattagtgaaagaataaaattaaactaga 409  Q
    |||||||||||| ||| || |||||||||||  ||||| ||||||| ||||    
T  21404376 attagtagcttaatatgagcattattagtgacggaatataattaaattaga 21404326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 5311 - 5367
Alignment:
Q  278 ttattttatcgagtttagtgtcattttgaacaatttatgtgaataattgcgatgtgt 334  Q
    |||||||||||||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  5311 ttattttatcgagtttagtgtctttttgtataatttatttgaataattgtgatgtgt 5367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1939 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 559 - 484
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtc-attttgaacaatttatgtgaataattgcgatgtgt 334  Q
    ||||| |||||||||||  |||||||||||||||||||||  ||||| | ||||||| |||||||||| |||||||    
T  559 ccctattttattatttaaatattttatcgagtttagtgtcttttttgtataatttatttgaataattgtgatgtgt 484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 29086 - 29020
Alignment:
Q  260 ccctaatttattatttagttattttatcgagtttagtgtcattttgaacaatttatgtgaataattg 326  Q
    ||||| ||||||||||| |||||||||  ||||||||||| ||||| | ||||||| ||||||||||    
T  29086 ccctattttattatttatttattttattaagtttagtgtctttttgtataatttatttgaataattg 29020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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