View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_1 (Length: 1153)
Name: NF0601_low_1
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 41674915 - 41675185
Alignment:
| Q |
2 |
tttgtgatgaggtttttattggtggccactaagtagatacactttaaaacctttgcttttctcaaaaaggcagttaaaatcttatattcaaggtgagata |
101 |
Q |
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| T |
41674915 |
tttgtgatgaggtttttattggtggccactaagtagagacactataaaacctttgcttttctcaaaaaggcagttacaatcttatattcaaagtgagata |
41675014 |
T |
|
| Q |
102 |
ataggtaccaacttacattccttcaagctaaagatatgtgtttaaggatttgctgcaggcctgcagccatggtaggatcaaaatggtttttaatcaatac |
201 |
Q |
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| T |
41675015 |
ataggtaccaacttacattccttcaagctaaagatatgtgtttaaggatttgctgcaggcctgcagccatggtaggatcaaaatggtttttaatcaatac |
41675114 |
T |
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| Q |
202 |
ttaagtttctttgatcaagattatagacaagaaaatataataaccttttcatagttagaccaaattctgcc |
272 |
Q |
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| T |
41675115 |
ttaagtttctttgatcaagattatagacaagaaaatataataaccttttcatagttagaccaaattctgcc |
41675185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 341 - 557
Target Start/End: Original strand, 41675254 - 41675458
Alignment:
| Q |
341 |
acatgtggccaaacaaaagatatttgcttagaaataattaaatgaatatttaaatacttatgttattatagataaacgtcatttttaaaacctatgtgta |
440 |
Q |
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| T |
41675254 |
acatgtggccaaacaaaagatatttgcttacaaataattaa------------atacttatgttattatagataaacgtcatttttaaaacctatgtgta |
41675341 |
T |
|
| Q |
441 |
tatagtgtagccgaagttgaagggttagactctcacaacgtgacgaacaaaagtttaaataccaattaagaaagatatccatatttagcgtctgtcacat |
540 |
Q |
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| T |
41675342 |
tatagtgtagctgaagctgaagggttagactctcacaacgtgacgaacaaaagtttgaatatcgattgagaaagatatccatatttaacgtctgtcacat |
41675441 |
T |
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| Q |
541 |
tttgaataggataaact |
557 |
Q |
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| T |
41675442 |
tttgaataggataaact |
41675458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 973 - 1124
Target Start/End: Original strand, 41676104 - 41676255
Alignment:
| Q |
973 |
tttgttgatcatagacattataggggacagtttgacacctatgttaaaaagagcagctttaaacgaaagtctctcatgcataatgcaccatataaggtga |
1072 |
Q |
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| T |
41676104 |
tttgtagatcatagacattataggggagagtttgacacctatgttaaaaagagcagctttaaacgaaagtctctcatgcataatggaccacatatggtga |
41676203 |
T |
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| Q |
1073 |
acgtgactcaggatggtctcgatgttccatagtttggaccaaaccttcctat |
1124 |
Q |
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| T |
41676204 |
acgtgactcaggatggtctcgatgttccatagtttggaccaaaccttcctat |
41676255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 566 - 722
Target Start/End: Original strand, 41675502 - 41675658
Alignment:
| Q |
566 |
cggatacaaaaagtttacactcataactaaaagacaaaatacaagtgttttagttataataataatgaaaagtttgcactgttaccgtttttcatcaaac |
665 |
Q |
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| T |
41675502 |
cggatacaaaaagtttacacccttaactaaaagacaaaatataagtgtttaagttataataataatgaaaagtttgcactgttaccgtttttcatcaaac |
41675601 |
T |
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| Q |
666 |
acagttaaaaaatgtttaggtaaccgttttaattctgaagtgacaagtccacatcaa |
722 |
Q |
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| T |
41675602 |
aaagttaaaaaatgtttaggtgaccgttttaattctgaagtgacaagtccaaatcaa |
41675658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 832 - 866
Target Start/End: Original strand, 41675714 - 41675748
Alignment:
| Q |
832 |
ccatagagttctccatcttcatcaattttcataca |
866 |
Q |
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| T |
41675714 |
ccatagagttctccatcttcatcaattttcataca |
41675748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 6276617 - 6276380
Alignment:
| Q |
1 |
ctttgtgatgaggtttt-tattggtggccactaagtagatacactttaaaacctttgcttttctcaaaaaggcagttaaaatcttatattcaaggtgaga |
99 |
Q |
| |
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| T |
6276617 |
ctttgtgatgaggttttatattggtggccac-cggtagat--actttaaaatcattgcttttcttgaaaaggcagttacaatcttatattcaaaatgaga |
6276521 |
T |
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| Q |
100 |
taataggtaccaacttacattccttcaagctaaagatatgtgtttaaggatttgctgcaggcctgcagccatggtaggatcaaaatggtttttaatcaat |
199 |
Q |
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| T |
6276520 |
taataggtaccaacttacattccttcaagctaaag--atgtatttaaggatttgctgcaggcct---accatggtaggatcaaaat-------------- |
6276440 |
T |
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| Q |
200 |
acttaagtttctttgatcaagattatagacaagaaaatataataaccttttcatagttagac |
261 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
6276439 |
--ttaagtttctttgatgaacattatagacaagaaaatataataactttttcttagttagac |
6276380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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