View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0601_low_11 (Length: 518)

Name: NF0601_low_11
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0601_low_11
NF0601_low_11
[»] chr7 (2 HSPs)
chr7 (97-501)||(9238019-9238419)
chr7 (1-149)||(9238269-9238417)
[»] chr8 (7 HSPs)
chr8 (97-499)||(28244674-28245057)
chr8 (1-81)||(28244975-28245055)
chr8 (217-288)||(45349451-45349522)
chr8 (341-378)||(45349374-45349411)
chr8 (217-288)||(17629879-17629950)
chr8 (97-136)||(45349547-45349586)
chr8 (1-38)||(45349547-45349584)
[»] chr6 (12 HSPs)
chr6 (97-507)||(11946706-11947134)
chr6 (236-507)||(14415840-14416107)
chr6 (357-507)||(14322946-14323097)
chr6 (1-121)||(11947011-11947132)
chr6 (327-471)||(14666695-14666841)
chr6 (339-392)||(17715760-17715813)
chr6 (217-288)||(14666858-14666929)
chr6 (217-271)||(17715835-17715889)
chr6 (98-136)||(17715914-17715952)
chr6 (1-38)||(17715914-17715951)
chr6 (98-136)||(14666954-14666992)
chr6 (1-38)||(14666954-14666991)
[»] chr3 (6 HSPs)
chr3 (166-501)||(13851983-13852312)
chr3 (217-471)||(1658577-1658811)
chr3 (68-121)||(13851983-13852037)
chr3 (97-136)||(1658513-1658552)
chr3 (1-38)||(1658515-1658552)
chr3 (97-134)||(13851950-13851987)
[»] scaffold0832 (1 HSPs)
scaffold0832 (330-508)||(4-184)
[»] scaffold0838 (1 HSPs)
scaffold0838 (357-508)||(1-153)
[»] chr5 (4 HSPs)
chr5 (341-471)||(31406255-31406386)
chr5 (326-471)||(24047019-24047167)
chr5 (98-136)||(24046893-24046931)
chr5 (1-38)||(24046894-24046931)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 97 - 501
Target Start/End: Complemental strand, 9238419 - 9238019
Alignment:
Q  97 cgtgagaagctcgacggaatgagaatgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatgagaatc-gtgagaatgc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9238419 cgtgagaagctcgacggaatgagaatgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatgagaatccgtgagaatgc 9238320  T
Q  196 gtgagaagctcgacggaatgagaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtggtgaagct 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  9238319 gtgagaagctcgacggaatgagaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcaacgttggtgaagct 9238220  T
Q  296 tgacgggggttctgctgaaggtgtgcgacggaattgagatct-tgtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggtt 394  Q
    |||||| ||||||||||||        ||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9238219 tgacggtggttctgctgaa------tcacggtggtgagatctctgtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagtt 9238126  T
Q  395 tataatacttttcttatttattttattttgactattgttgaccaaaaatttaacacgtgaatgaataaacaatgggtacttgttactcttttaatacttg 494  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  9238125 tataatactttttttatttattttattttgactattgttgacaaaaaatttaacacgtgaatgaataataaatgggtacttgttactcttttaatacttg 9238026  T
Q  495 tattttt 501  Q
    |||||||    
T  9238025 tattttt 9238019  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 9238417 - 9238269
Alignment:
Q  1 tgagaagctcgacggaatgagaatgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatgagaat-cgtgagaatgcgt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9238417 tgagaagctcgacggaatgagaatgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatgagaatccgtgagaatgcgt 9238318  T
Q  100 gagaagctcgacggaatgag-aatgcgtgacggtggagcttgacggtggtt 149  Q
    |||||||||||||||||||| ||| |||  ||||| |||||||||||||||    
T  9238317 gagaagctcgacggaatgagaaattcgt--cggtgaagcttgacggtggtt 9238269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 97 - 499
Target Start/End: Complemental strand, 28245057 - 28244674
Alignment:
Q  97 cgtgagaagctcgacggaatgagaatgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatgagaatcgtgagaatgcg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||               ||    
T  28245057 cgtgagaagctcgacggaatgagaatgcgtgacggtggagcttgacggtggttctgacagaagttcgacggtggttgagaatg---------------cg 28244973  T
Q  197 tgagaagctcgacggaatgagaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtggtgaagctt 296  Q
    ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  28244972 tgagaagctcgacagaatgacaaattcgtcggtgaagcttgatggtggttgatggtgtgagcgtgtcggtggtcgaaggtgtgcgatggtggtgaagctt 28244873  T
Q  297 gacgggggttctgctgaaggtgtgcgacggaattgagatct-tgtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggttt 395  Q
    ||||| ||||||||||||        ||||   | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28244872 gacggtggttctgctgaatc------acggtggttagatctctatgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggttt 28244779  T
Q  396 ataatacttttcttatttattttattttgactattgttgacca-aaaatttaacacgtgaatgaataaacaatgggtacttgttactcttttaatacttg 494  Q
    ||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  28244778 ataatactttttttatttattttattttgattattgttgaccaaaaaatttaacacgtgaatgaataatgaatgggtacttgttactcttttaatacttg 28244679  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 28245055 - 28244975
Alignment:
Q  1 tgagaagctcgacggaatgagaatgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatg 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28245055 tgagaagctcgacggaatgagaatgcgtgacggtggagcttgacggtggttctgacagaagttcgacggtggttgagaatg 28244975  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 45349522 - 45349451
Alignment:
Q  217 gaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtgg 288  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45349522 gaaattcgtcggtgaagtttgacggtggtcgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtgg 45349451  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 45349411 - 45349374
Alignment:
Q  341 gagagagaaaagtgatttttgagggaagagagagaaaa 378  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45349411 gagagagaaaagtgatttttgagggaagagagagaaaa 45349374  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 17629950 - 17629879
Alignment:
Q  217 gaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaagg-tgtgcgacggtgg 288  Q
    ||||||||||||||||||| |||| |||| || ||||||||||||||||||||||| ||  ||||||||||||    
T  17629950 gaaattcgtcggtgaagctcgacg-tggtcgagggtgtgagcgtgacggtggtcgagggaagtgcgacggtgg 17629879  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 45349586 - 45349547
Alignment:
Q  97 cgtgagaagctcgacggaatgagaatgcgtgacggtggag 136  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  45349586 cgtgagaagctcgacggcatgagaatgcgtgacggtggag 45349547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45349584 - 45349547
Alignment:
Q  1 tgagaagctcgacggaatgagaatgcgtgacggtggag 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  45349584 tgagaagctcgacggcatgagaatgcgtgacggtggag 45349547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 97 - 507
Target Start/End: Complemental strand, 11947134 - 11946706
Alignment:
Q  97 cgtgagaagctcgacggaatgagaatgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatgagaatc-gtgagaatgc 195  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  11947134 cgtgagaagctcaacggaatgagaatgcgtgacggtggagcttcacggtggttctgacagaagctcgacggtggttgggaatgagaatccgtgagaatgc 11947035  T
Q  196 gtgagaagct-----------------cgacggaatgagaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgt 278  Q
    ||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11947034 gtgagaagcttgacggaatgagaagctcgacggaatgagaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgt 11946935  T
Q  279 gcgacggtggtgaagcttgacgggggttctgctgaa----ggtgtgcgacggaattgagatcttgtgagagagaaaagtgatttttgagggaagagagag 374  Q
    ||||||||||||||||||||||| |||   ||||||    ||||   |  ||||||||||||| |  ||||||||| |||||||||||||||||||||||    
T  11946934 gcgacggtggtgaagcttgacggtggtgaagctgaatcacggtg---gttggaattgagatctcg--agagagaaaggtgatttttgagggaagagagag 11946840  T
Q  375 aaaagtgtttctcaa-tggtttataatacttttcttatttattttattttgactattgttgacca-aaaatttaacacgtgaatgaataaacaatgggta 472  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| ||||    
T  11946839 aaaagtgtttctcaaatggtttataatactttatttatttattttattttgactattgttgaccaaaaaatttaacacgtgaatgaataatgaat-ggta 11946741  T
Q  473 cttgttactcttttaatacttgtattttttatttt 507  Q
    |||||||||||||||||||||||| ||||| ||||    
T  11946740 cttgttactcttttaatacttgtaatttttttttt 11946706  T

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Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 236 - 507
Target Start/End: Original strand, 14415840 - 14416107
Alignment:
Q  236 tgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtggtgaagcttgacgggggttctgctgaaggtgtgcgacggaattgagat 335  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||      ||| ||   ||||||    
T  14415840 tgacggtggttgatggtgtgagcgtgacggtggttgaaggtgtgcgacggtggtgaagcttgacggtggttctgctgaatca---cgatgg---tgagat 14415933  T
Q  336 ct-tgtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggtttataatacttttcttatttattttattttgactattgttg 434  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  14415934 ctctgtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaattgtttataatactttttttatttattttattttgactattgttg 14416033  T
Q  435 acc-aaaaatttaacacgtgaatgaataaacaatgggtacttgttactcttttaatacttgtattttttatttt 507  Q
    ||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  14416034 accaaaaaatttaacacgtgaatgaataatgaatgggtacttgttactcttttaatacttgtattttttttttt 14416107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 357 - 507
Target Start/End: Original strand, 14322946 - 14323097
Alignment:
Q  357 ttttgagggaagagagagaaaagtgtttctcaatggtttataatacttttcttatttattttattttgactattgttgacc-aaaaatttaacacgtgaa 455  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14322946 ttttgagggaagagagagaaaagtgtttctcaattgtttataatactttttttatttattttattttgactattgttgaccaaaaaatttaacacgtgaa 14323045  T
Q  456 tgaataaacaatgggtacttgttactcttttaatacttgtattttttatttt 507  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  14323046 tgaataatgaatgggtacttgttactcttttaatacttgtattttttttttt 14323097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 11947132 - 11947011
Alignment:
Q  1 tgagaagctcgacggaatgagaatgcgtgacggtggagcttgacggtggttctgacagaagctcgacggtggttgagaatgagaat-cgtgagaatgcgt 99  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  11947132 tgagaagctcaacggaatgagaatgcgtgacggtggagcttcacggtggttctgacagaagctcgacggtggttgggaatgagaatccgtgagaatgcgt 11947033  T
Q  100 gagaagctcgacggaatgagaa 121  Q
    |||||||| |||||||||||||    
T  11947032 gagaagcttgacggaatgagaa 11947011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 327 - 471
Target Start/End: Complemental strand, 14666841 - 14666695
Alignment:
Q  327 aattgagatcttg-tgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggtttataatacttttcttatttattttattttga 425  Q
    ||||||||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |||||| ||| ||||||||||||||    
T  14666841 aattgagatctcggtgagagagaaaagtgattttttaggtaagagagagaaaagtgtttctgaatggcttataacactttttttacttattttattttga 14666742  T
Q  426 ctattgttgaccaaaa-atttaacacgtgaatgaataaacaatgggt 471  Q
    ||||||||||| ||||  ||||||||||||||||||||  |||||||    
T  14666741 ctattgttgactaaaatttttaacacgtgaatgaataatgaatgggt 14666695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 17715813 - 17715760
Alignment:
Q  339 gtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatgg 392  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  17715813 gtgagagagaaaagagatttttgacggaagagagagaaaagtgtttctcaatgg 17715760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 14666929 - 14666858
Alignment:
Q  217 gaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtgg 288  Q
    |||||||||||||||| |||||||||||| |||||||||||| ||| ||||||| | |||||||||| ||||    
T  14666929 gaaattcgtcggtgaaacttgacggtggtcgatggtgtgagcatgatggtggtcaagggtgtgcgacagtgg 14666858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 17715889 - 17715835
Alignment:
Q  217 gaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcg 271  Q
    |||||||||||||||| |||||||||||| |||||||||||| ||||||||||||    
T  17715889 gaaattcgtcggtgaaacttgacggtggtcgatggtgtgagcatgacggtggtcg 17715835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 17715952 - 17715914
Alignment:
Q  98 gtgagaagctcgacggaatgagaatgcgtgacggtggag 136  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17715952 gtgagaagctcgacggaatgagaatgcgtgacggtggag 17715914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17715951 - 17715914
Alignment:
Q  1 tgagaagctcgacggaatgagaatgcgtgacggtggag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17715951 tgagaagctcgacggaatgagaatgcgtgacggtggag 17715914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 14666992 - 14666954
Alignment:
Q  98 gtgagaagctcgacggaatgagaatgcgtgacggtggag 136  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  14666992 gtgagaagctcgacagaatgagaatgcgtgacggtggag 14666954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14666991 - 14666954
Alignment:
Q  1 tgagaagctcgacggaatgagaatgcgtgacggtggag 38  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  14666991 tgagaagctcgacagaatgagaatgcgtgacggtggag 14666954  T

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Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 166 - 501
Target Start/End: Original strand, 13851983 - 13852312
Alignment:
Q  166 ggtggttgagaatgagaatc-gtgagaatgcgtgagaagctcgacggaatgagaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacg 264  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13851983 ggtggttgagaatgagaatccgtgagaatgcgtgagaagctcgacggaatgagaaattcgtcggtgaagcttgacgatggttgatggtgtgagcgtgacg 13852082  T
Q  265 gtggtcgaaggtgtgcgacggtggtgaagcttgacgggggttctgctgaaggtgtgcgacggaattgagatc-ttgtgagagagaaaagtgatttttgag 363  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||        ||||   ||||||| |||||||||||||||||||||||||||    
T  13852083 gtggtcgaagatgtgcgacggtggtgaagcttgacggtggttctgctgaa------tcacggtggtgagatctttgtgagagagaaaagtgatttttgag 13852176  T
Q  364 ggaagagagagaaaagtgtttctcaatggtttataatacttttcttatttattttattttgactattgttgacc-aaaaatttaacacgtgaatgaataa 462  Q
    |||||||||||||||||||||||||||||||||||||||||   || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13852177 ggaagagagagaaaagtgtttctcaatggtttataatactt---ttttttgttttattttgactattgttgaccaaaaaatttaacacgtgaatgaataa 13852273  T
Q  463 acaatgggtacttgttactcttttaatacttgtattttt 501  Q
      ||| |||||||||||||||||||||||||||||||||    
T  13852274 tgaatcggtacttgttactcttttaatacttgtattttt 13852312  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 217 - 471
Target Start/End: Original strand, 1658577 - 1658811
Alignment:
Q  217 gaaattcgtcggtgaagcttgacggtggttgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtggtgaagcttgacgggggttctgctgaagg 316  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||  ||        | ||||||||||        
T  1658577 gaaattcgtcggtgaagcttaacggtggtcgatggtgtgagcgtgacggtggtcgaaggtgtgcgacggtggaaaa--------gtggttctgctg---- 1658664  T
Q  317 tgtgcgacggaattgagatct-tgtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggtttataatacttttcttatttat 415  Q
              |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| ||| || |    
T  1658665 ----------aattgagatctcggtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaattgcttataacactttttttactttt 1658754  T
Q  416 tttattttgactattgttgaccaaa-aatttaacacgtgaatgaataaacaatgggt 471  Q
    ||||||||||||||||||||| |||   ||||||| ||||||||||||  |||||||    
T  1658755 tttattttgactattgttgactaaattttttaacatgtgaatgaataatgaatgggt 1658811  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 13851983 - 13852037
Alignment:
Q  68 ggtggttgagaatgagaatc-gtgagaatgcgtgagaagctcgacggaatgagaa 121  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13851983 ggtggttgagaatgagaatccgtgagaatgcgtgagaagctcgacggaatgagaa 13852037  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 1658513 - 1658552
Alignment:
Q  97 cgtgagaagctcgacggaatgagaatgcgtgacggtggag 136  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  1658513 cgtgagaagctcgacagaatgagaatgcgtgacggtggag 1658552  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1658515 - 1658552
Alignment:
Q  1 tgagaagctcgacggaatgagaatgcgtgacggtggag 38  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  1658515 tgagaagctcgacagaatgagaatgcgtgacggtggag 1658552  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 13851950 - 13851987
Alignment:
Q  97 cgtgagaagctcgacggaatgagaatgcgtgacggtgg 134  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  13851950 cgtgagaagctcgacggaatgataatgcgtgatggtgg 13851987  T

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Target: scaffold0832 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 330 - 508
Target Start/End: Original strand, 4 - 184
Alignment:
Q  330 tgagatct-tgtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggtttataatacttttcttatttattttattttgacta 428  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  4 tgagatctctgtgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaattgtttataatactttttttatttattttattttgacta 103  T
Q  429 ttgttgacc-aaaaatttaacacgtgaatgaataaacaatgggtacttgttactcttttaatacttgtattttttatttta 508  Q
    ||||||||| ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  104 ttgttgaccaaaaaatttaacacttgaatgaataatgaatgggtacttgttactcttttaatacttgtattttttttttta 184  T

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Target: scaffold0838 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 357 - 508
Target Start/End: Original strand, 1 - 153
Alignment:
Q  357 ttttgagggaagagagagaaaagtgtttctcaatggtttataatacttttcttatttattttattttgactattgttgacc-aaaaatttaacacgtgaa 455  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  1 ttttgagggaagagagagaaaagtgtttctcaattgtttataatactttttttatttattttattttgactattgttgaccaaaaaatttaacacttgaa 100  T
Q  456 tgaataaacaatgggtacttgttactcttttaatacttgtattttttatttta 508  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  101 tgaataatgaatgggtacttgttactcttttaatacttgtattttttttttta 153  T

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Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 341 - 471
Target Start/End: Complemental strand, 31406386 - 31406255
Alignment:
Q  341 gagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggtttataatacttttcttatttattttattttgactattgttgaccaaa 440  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||| |||  |||||| ||||||||||||||||| |||    
T  31406386 gagagagaaaagtgttttttgagggaagagagagaaaagtgtttctcaatgtcttataacactttttttacctattttgttttgactattgttgactaaa 31406287  T
Q  441 a-atttaacacgtgaatgaataaacaatgggt 471  Q
    |  ||||||||||||||||||||  |||||||    
T  31406286 atttttaacacgtgaatgaataatgaatgggt 31406255  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 326 - 471
Target Start/End: Original strand, 24047019 - 24047167
Alignment:
Q  326 gaattgagatcttg-tgagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatggtttataatac-ttttcttatttattttatttt 423  Q
    |||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |||| ||| |||||||| |||    
T  24047019 gaattgagatctcggtaagagagaaaagtgatttttgagggaagagagagaaaagtgtttctcaatagcttataacacatttttttacttattttaattt 24047118  T
Q  424 gactattgttgaccaaaa-atttaacacgtgaatgaataaacaatgggt 471  Q
    |||||||||| || ||||  |||||||||||||| |||||  |||||||    
T  24047119 gactattgttaactaaaatttttaacacgtgaataaataatgaatgggt 24047167  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 24046893 - 24046931
Alignment:
Q  98 gtgagaagctcgacggaatgagaatgcgtgacggtggag 136  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24046893 gtgagaagctcgacggaatgagaatgcgtgacggtggag 24046931  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24046894 - 24046931
Alignment:
Q  1 tgagaagctcgacggaatgagaatgcgtgacggtggag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24046894 tgagaagctcgacggaatgagaatgcgtgacggtggag 24046931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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