View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0601_low_15 (Length: 481)
Name: NF0601_low_15
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 17892357 - 17892728
Alignment:
| Q |
16 |
atggactttctagctcaaaactacacgggttttggttcattattataacatgtataataatcatgtaacttactaattaggttcaatgttttcaaccata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17892357 |
atggactttctagctcaaaactacacgggttttggttcattattataacatgtataataatcatgtaacttactaattaggttcattgttttcaaccata |
17892456 |
T |
|
| Q |
116 |
tacaaatgaatattatatgcataatctaattaaaatgcaaaccaaattttaaacattaccaacatattgacaatgattgcaatgacgattcaatgctgcc |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17892457 |
tacaaatgaatattatatgtataatctaattaaaatgcaaaccaaattttaaacattaccaacatattgacaatgattgcaatgacgattcaatgctgcc |
17892556 |
T |
|
| Q |
216 |
tcaattgattcttcaatcacaaacaacaaaatatacaaaggtggatgatgatgcaattcaagttgaaatgaccacataggcattcccatttttaaattac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17892557 |
tcaattgattcttcaatcacaaacaacaaaatatacaaaggtggatgatgattcaattcaagttgaaatgaccacataggcattcccatttttaaattac |
17892656 |
T |
|
| Q |
316 |
tttccaaatttgcatattcaagtaaaccattcacattctcacgaaatgatcctccattaaacattaatgggt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17892657 |
tttccaaatttgcatattcaagtaaaccattcacattctcacgaaatgatgctccattaaacattaatgggt |
17892728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2743 times since January 2019
Visitors: 3823