View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_16 (Length: 457)
Name: NF0601_low_16
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 24 - 429
Target Start/End: Original strand, 26134336 - 26134738
Alignment:
| Q |
24 |
atattttcctcgtaaatctttcaaatcaacttatcacttatagtttgtttactatatatattatcttaannnnnnnna--aaataactatatattaactt |
121 |
Q |
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| T |
26134336 |
atattttcctcataaatctttcaaaccaacttatcacttatagtttgtttactatatat--tatcttaatttttttttttaaataactatatattaactt |
26134433 |
T |
|
| Q |
122 |
aaattacactattattgtatatgataattgttcttgttatgccaatatctatccaattagaaaatagaaatactggttggatgatgaattgtaatttgta |
221 |
Q |
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| T |
26134434 |
aaattacactatgattgtat--gataattgttcttgttatgccaatatctatccaattagaaaatagaaatactggttggatgatgaattgtaatttgta |
26134531 |
T |
|
| Q |
222 |
gttgaaagtttagcatatagtttaactaatcattctctcgtttctatacaaccacttatttaatcaacaacagggtagagggctagattccagcaacaat |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26134532 |
gttgaaagtttagcatatagtttaactaatcattctctcgtttatatacaaccacttatttaatcaacaacagggtagagggctagattccagcaacaat |
26134631 |
T |
|
| Q |
322 |
ccattaatgaagctaaataaaacaagcagcagaatttgctccctccaacaccagcaacaattcatataatttagatactacattaatccaataaaatcga |
421 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
26134632 |
ccattaataaagctaaa-aaaacaagcagcagaatttgctccctccaacaccagcaacaattcatataatttagatactacattaatccaattacatcga |
26134730 |
T |
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| Q |
422 |
tgccaatt |
429 |
Q |
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|||||||| |
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| T |
26134731 |
tgccaatt |
26134738 |
T |
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