View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_17 (Length: 446)
Name: NF0601_low_17
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 190 - 446
Target Start/End: Original strand, 1090354 - 1090610
Alignment:
| Q |
190 |
tagccttgcggtagtttgtgataaagaatctctatgatttagggataaggatggtggccaataatttaaagcatagatgataaaccccattttctaaaag |
289 |
Q |
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| T |
1090354 |
tagccttgcggtagtttgtgataaagaatctctatgatttagggataaggatggtggccaataatttaaagcatagatgataaaccccattttctaaaag |
1090453 |
T |
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| Q |
290 |
aaatagaaatgcacacatacttataaacagtgacaaatatatcatatcaaattgatatatcctaaaaactccatccattatggaaataatctttactcta |
389 |
Q |
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| T |
1090454 |
aaatagaaatgcacacatatttataaacagtgacaaatatatcatatcaaattgatatatcctaaaaactccatccattatggaaataatctttactcta |
1090553 |
T |
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| Q |
390 |
taatttatggccttgacgtgcgtttggcattttgcctagtttgaatcatacgagcaa |
446 |
Q |
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| T |
1090554 |
taatttatggccttgacgtgcgtttggcattttgcctagtttgaatcatacgagcaa |
1090610 |
T |
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