View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0601_low_18 (Length: 441)

Name: NF0601_low_18
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0601_low_18
NF0601_low_18
[»] chr8 (5 HSPs)
chr8 (109-416)||(35010479-35010785)
chr8 (304-354)||(37246305-37246355)
chr8 (298-347)||(27696377-27696426)
chr8 (298-359)||(43596968-43597029)
chr8 (298-354)||(40953370-40953426)
[»] chr4 (7 HSPs)
chr4 (298-373)||(5787265-5787340)
chr4 (298-373)||(34513967-34514042)
chr4 (298-353)||(28115890-28115945)
chr4 (298-373)||(34513718-34513793)
chr4 (299-358)||(44290133-44290192)
chr4 (298-373)||(45499141-45499216)
chr4 (298-359)||(3767872-3767933)
[»] chr6 (6 HSPs)
chr6 (300-390)||(9314912-9315002)
chr6 (298-357)||(29979364-29979423)
chr6 (301-354)||(391236-391289)
chr6 (304-352)||(23404630-23404678)
chr6 (298-365)||(10789387-10789454)
chr6 (298-359)||(12255247-12255308)
[»] chr5 (4 HSPs)
chr5 (304-416)||(29860946-29861059)
chr5 (301-374)||(7883742-7883815)
chr5 (298-373)||(33007960-33008035)
chr5 (298-353)||(33134228-33134283)
[»] chr1 (4 HSPs)
chr1 (298-373)||(28622877-28622952)
chr1 (298-348)||(49549660-49549710)
chr1 (299-356)||(19910141-19910198)
chr1 (298-359)||(37346976-37347037)
[»] chr3 (3 HSPs)
chr3 (298-359)||(28457748-28457809)
chr3 (301-359)||(21748362-21748420)
chr3 (22-92)||(25782983-25783053)
[»] chr2 (2 HSPs)
chr2 (299-373)||(13349466-13349540)
chr2 (299-359)||(27338846-27338906)
[»] chr7 (1 HSPs)
chr7 (324-373)||(34703157-34703206)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 109 - 416
Target Start/End: Original strand, 35010479 - 35010785
Alignment:
Q  109 tatttaccatatcgaatatatttgaatnnnnnnnnctaacttttaataaatattaattaatattatagacatacgtgtagtgtggtgatgttgtaaaact 208  Q
    ||||||||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35010479 tatttaccatatcgaatatatttgaa--aaaaaaactaactttttataaatattaattaatattatagacatacgtgtagtgtggtgatgttgtaaaact 35010576  T
Q  209 atcagacaagcaccatttataaatacctttcgttttcaatattaattttatttactttgtc--nnnnnnnnntattaatttttatttatggcaatatttt 306  Q
    |||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||           |||||||||||||||||||| |||||||    
T  35010577 atcagataagcaccatttataaatatttttcattttcaatattaattttatttactttgtcaaaaaaaaaaatattaatttttatttatggc-atatttt 35010675  T
Q  307 aaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaatttagccaatacacaggtataatttacggagga 406  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| || ||    
T  35010676 aaaaatggtgaaatagcaagataataaataaggaatgatcttttaatctcatcgggatagtttctaatttagccaatactcaggtataaattacagacga 35010775  T
Q  407 aagtaatgat 416  Q
    ||||||||||    
T  35010776 aagtaatgat 35010785  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 37246355 - 37246305
Alignment:
Q  304 tttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatc 354  Q
    ||||||||||||  |||| |||||||||||||||||||| ||||| |||||    
T  37246355 tttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatc 37246305  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 27696426 - 27696377
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatct 347  Q
    |||||||||||||||| |  |||| |||||||||||||||||||| ||||    
T  27696426 caatattttaaaaatgacagaatatcaagataataaataaggaatgatct 27696377  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 43597029 - 43596968
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 359  Q
    ||||||||||||||||||  ||||  ||||| ||||||||||| | ||||| ||||||||||    
T  43597029 caatattttaaaaatggcagaatataaagattataaataaggagtgatcttctaatctcatc 43596968  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 40953426 - 40953370
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatc 354  Q
    |||||||||||||| |||  |||| |||| ||||||||||||||| ||||| |||||    
T  40953426 caatattttaaaaagggcagaatatcaaggtaataaataaggaatgatcttctaatc 40953370  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 5787265 - 5787340
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 373  Q
    ||||||||||||||||||  |||| |||||||||||||||||||| ||||||||||| |||| | ||| |||||||    
T  5787265 caatattttaaaaatggcagaatatcaagataataaataaggaatgatcttttaatcccatcaggataatttctaa 5787340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 34514042 - 34513967
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 373  Q
    ||||||||||||||||||  |||| |||||||||||||||| ||| ||||| ||||||| || | ||| |||||||    
T  34514042 caatattttaaaaatggcagaatatcaagataataaataagaaatgatcttctaatctcgtccggataatttctaa 34513967  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 28115890 - 28115945
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaat 353  Q
    |||||||||||||||||| ||||  ||||||||||||||| |||| ||||| ||||    
T  28115890 caatattttaaaaatggcaaaatctcaagataataaataaagaatgatcttctaat 28115945  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 34513718 - 34513793
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 373  Q
    ||||||||||||||||||  |||| |||||||||||||||| ||| || || ||||| |||| | ||| |||||||    
T  34513718 caatattttaaaaatggcagaatatcaagataataaataagaaatgattttctaatcccatcaggataatttctaa 34513793  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 44290133 - 44290192
Alignment:
Q  299 aatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcat 358  Q
    |||||||||||||||||  |||| |||||||||||||||  ||| ||||| |||||||||    
T  44290133 aatattttaaaaatggcagaatatcaagataataaataattaatgatcttctaatctcat 44290192  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 45499141 - 45499216
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 373  Q
    ||||||||| ||||||||  |||| ||||||||||||||| |||| ||||| ||||| ||||   |||||||||||    
T  45499141 caatattttcaaaatggcagaatatcaagataataaataaagaatgatcttctaatcccatcatgatagtttctaa 45499216  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 3767933 - 3767872
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 359  Q
    |||||||||||||||  |  |||| |||||||||||||||||||| || || ||||||||||    
T  3767933 caatattttaaaaataacagaatatcaagataataaataaggaatgatattctaatctcatc 3767872  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 9315002 - 9314912
Alignment:
Q  300 atattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaatttagccaatacacagg 390  Q
    ||||||||||||||||  |||| |||||||||||||||||||| ||||| |||||||| | | ||| ||||||||| |||| |||| ||||    
T  9315002 atattttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatctcaccaggataatttctaattcagcctatactcagg 9314912  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 29979364 - 29979423
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctca 357  Q
    |||||||||||||||||   |||| |||||||||||||||||||| ||||||||||||||    
T  29979364 caatattttaaaaatggtagaatatcaagataataaataaggaatgatcttttaatctca 29979423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 391236 - 391289
Alignment:
Q  301 tattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatc 354  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||    
T  391236 tattttaaaaatggcaaaatatcaagataataaataaggaatgatcttctaatc 391289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 23404678 - 23404630
Alignment:
Q  304 tttaaaaatggcgaaatagcaagataataaataaggaataatcttttaa 352  Q
    ||||||||||||  |||| ||||||||||||| ||||||||||||||||    
T  23404678 tttaaaaatggcagaatatcaagataataaattaggaataatcttttaa 23404630  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 10789387 - 10789454
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaata 365  Q
    ||||||||||||||| ||  |||| |||||||||||||||||||| || || ||||| |||| |||||    
T  10789387 caatattttaaaaatagcagaatatcaagataataaataaggaatgatattataatcccatcagaata 10789454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 12255308 - 12255247
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 359  Q
    |||||||||||||| | |  |||| |||||||||||||||||||| ||||| ||||| ||||    
T  12255308 caatattttaaaaaggacagaatatcaagataataaataaggaattatcttctaatcccatc 12255247  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 416
Target Start/End: Complemental strand, 29861059 - 29860946
Alignment:
Q  304 tttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaatttagccaatacacagg-tataatttacgg 402  Q
    ||||||||||||  |||| |||||||||||||||||||| ||||| ||||| |||| | ||| ||||||| |||||| |||| |||| ||||| ||||      
T  29861059 tttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatcccatcaggataatttctaacttagcctatactcaggatataaattacaa 29860960  T
Q  403 aggaaagtaatgat 416  Q
    |||||||| |||||    
T  29860959 aggaaagtcatgat 29860946  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 374
Target Start/End: Original strand, 7883742 - 7883815
Alignment:
Q  301 tattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaat 374  Q
    |||||||||||||||  ||||  ||||||||||||||||||| ||||| ||||| |||| | ||| ||||||||    
T  7883742 tattttaaaaatggcagaatataaagataataaataaggaatgatcttctaatcccatcaggataatttctaat 7883815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 33007960 - 33008035
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 373  Q
    ||||||||||| |||| |  |||| |||||||||||||||||||| ||||| ||||| |||| | ||| |||||||    
T  33007960 caatattttaataatgacagaatatcaagataataaataaggaatgatcttctaatcccatcaggataatttctaa 33008035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 33134283 - 33134228
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaat 353  Q
    |||||||||||||||| |  |||| |||||||||||||||||||| ||||| ||||    
T  33134283 caatattttaaaaatgacagaatatcaagataataaataaggaatgatcttctaat 33134228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 28622877 - 28622952
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 373  Q
    ||||||||||||||| ||  |||| |||||||||||||||||||| ||||| |||||||||| | ||| |||||||    
T  28622877 caatattttaaaaatcgcagaatatcaagataataaataaggaatgatcttctaatctcatcaggataatttctaa 28622952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 49549710 - 49549660
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatctt 348  Q
    ||||||||||||||||||  |||| |||||||||||||||||||| |||||    
T  49549710 caatattttaaaaatggcagaatatcaagataataaataaggaatgatctt 49549660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 19910198 - 19910141
Alignment:
Q  299 aatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctc 356  Q
    |||||||||||||| || ||||| ||||||||| ||||||| || ||||| |||||||    
T  19910198 aatattttaaaaattgcaaaatatcaagataattaataaggcatgatcttctaatctc 19910141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 37346976 - 37347037
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 359  Q
    ||||||||| ||||||||  |||| || ||||||||||||||||| ||||| ||||| ||||    
T  37346976 caatatttttaaaatggcagaatatcaggataataaataaggaatgatcttctaatcccatc 37347037  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 28457748 - 28457809
Alignment:
Q  298 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 359  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| ||||| ||||| ||||    
T  28457748 caatattttaaaaatggcaatatatcaagataataaataaggaatgatcttctaatcccatc 28457809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 21748362 - 21748420
Alignment:
Q  301 tattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 359  Q
    |||||||||||||||  |||| ||||||||||||||||||||  |||| ||||||||||    
T  21748362 tattttaaaaatggcagaatatcaagataataaataaggaatggtcttctaatctcatc 21748420  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 25783053 - 25782983
Alignment:
Q  22 atttttagtggtattcttgacacaccttatgccgaggagtctgctatagcaggttaatataatttattttt 92  Q
    |||||||||||| ||||||||||||||| ||| ||| ||||| ||  |||| |||| ||||||| ||||||    
T  25783053 atttttagtggtcttcttgacacaccttgtgctgagaagtctacttcagcatgttattataattcattttt 25782983  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 13349466 - 13349540
Alignment:
Q  299 aatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 373  Q
    ||||||| |||||||||  |||| |||||||||||||||||||| ||||| ||||| |||| | ||| |||||||    
T  13349466 aatatttaaaaaatggcagaatatcaagataataaataaggaatgatcttctaatcgcatcaggataatttctaa 13349540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 27338906 - 27338846
Alignment:
Q  299 aatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 359  Q
    ||||||||||||||| |  |||| |||||||||||||||||||| || || ||||| ||||    
T  27338906 aatattttaaaaatgacagaatatcaagataataaataaggaatgatattataatcccatc 27338846  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 34703206 - 34703157
Alignment:
Q  324 aagataataaataaggaataatcttttaatctcatcggaatagtttctaa 373  Q
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T  34703206 aagataataaataaggaatgatcttctaatcccatcaggatagtttctaa 34703157  T

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