View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0601_low_19 (Length: 435)

Name: NF0601_low_19
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0601_low_19
NF0601_low_19
[»] chr8 (1 HSPs)
chr8 (15-406)||(32566003-32566394)
[»] chr3 (4 HSPs)
chr3 (20-147)||(43479189-43479316)
chr3 (331-406)||(43473777-43473852)
chr3 (243-327)||(43478988-43479069)
chr3 (21-144)||(53242922-53243046)
[»] chr1 (2 HSPs)
chr1 (80-134)||(26240570-26240624)
chr1 (291-351)||(24455640-24455699)
[»] chr4 (3 HSPs)
chr4 (80-133)||(18363382-18363435)
chr4 (80-133)||(36599493-36599546)
chr4 (80-134)||(34941773-34941827)


Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Complemental strand, 32566394 - 32566003
Alignment:
Q  15 gacaagatcaccatttctttcatcaacattttcacagcgttacaaaatgaaaaattaaagtcaaggttgataattatagtgtcagaagagaaactcctga 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32566394 gacaagatcaccatttctttcgtcaacattttcacagcgttacaaaatgaaaaattaaagtcaaggttgataattatagtgtcagaagagaaactcctga 32566295  T
Q  115 aatttgaaactttaatacttgatgatgaaaaacggacgctactaagaataatgttaggttcaacacacaaacaaataaattgaaatttaaaattattcat 214  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32566294 aatttgaaactttaatatttgatgataaaaaacggacgctactaagaataatgttaggttcaacacacaaacaaataaattgaaatttaaaattattcat 32566195  T
Q  215 atgaacattacaaaatccatttgctttctttttggtctcaacaaacgtatataagaaaagagaattaattaaagcgtgtacatcttttagaagagtagaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32566194 atgaacattacaaaatccatttgctttctttttggtctcaacaaacgtatataagaaaagagaattaattaaagcgtgtacatcttttagaagagtagaa 32566095  T
Q  315 tttttgcaaacacctattagttacaattctttaattttcagcgaacatttacgcaattgcaattgacgggatgcagatgaggaagacataag 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32566094 tttttgcaaacacctattagttacaattctttaattttcagcgaacatttacgcaattgcaattgacgggatgcagatgaggaagacataag 32566003  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 43479316 - 43479189
Alignment:
Q  20 gatcaccatttctttcatcaacattttcacagcgttacaaaatgaaaaattaaagtcaaggttgataattatagtgtcagaagagaaactcctgaaattt 119  Q
    |||||| |||||||||| |||||||||||||  |||||||||||||||||||||||    |||||||||||| ||||||||||||||||| || ||||||    
T  43479316 gatcacaatttctttcaccaacattttcacaatgttacaaaatgaaaaattaaagttggtgttgataattatcgtgtcagaagagaaacttctaaaattt 43479217  T
Q  120 gaaactttaatacttgatgatgaaaaac 147  Q
    ||||||||||||||| ||||||||||||    
T  43479216 gaaactttaatacttcatgatgaaaaac 43479189  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 331 - 406
Target Start/End: Complemental strand, 43473852 - 43473777
Alignment:
Q  331 ttagttacaattctttaattttcagcgaacatttacgcaattgcaattgacgggatgcagatgaggaagacataag 406  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43473852 ttagttacaattctttaatttttagcaaacatttacgcaattgcaattgaggggatgcagatgaggaagacataag 43473777  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 43479069 - 43478988
Alignment:
Q  243 tttttggtctcaacaaacgtatataagaaaagagaattaattaaagcgtgtacatcttttagaagagtagaatttttgcaaacac 327  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| ||||  ||||| ||||| ||||||||||||||||||||    
T  43479069 tttttggtctcaacaaacgtatatatgcaaagagaattaattaaagtgtgt--atcttctagaa-agtagaatttttgcaaacac 43478988  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 53242922 - 53243046
Alignment:
Q  21 atcaccatttctttcatcaacatttt-cacagcgttacaaaatgaaaaattaaagtcaaggttgataattatagtgtcagaagagaaactcctgaaattt 119  Q
    ||||| |||||||||| ||| ||||| |||| ||||||||||||  |  |||||||||   ||||||| | | |||| ||||||||||| |||| |||||    
T  53242922 atcacaatttctttcaccaaaatttttcacatcgttacaaaatgccagtttaaagtcagttttgataactcttgtgttagaagagaaacccctggaattt 53243021  T
Q  120 gaaactttaatacttgatgatgaaa 144  Q
    |||||||||||||||  ||||||||    
T  53243022 gaaactttaatacttcgtgatgaaa 53243046  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 26240624 - 26240570
Alignment:
Q  80 gttgataattatagtgtcagaagagaaactcctgaaatttgaaactttaatactt 134  Q
    |||||||| ||| |||||| ||||||||| ||| |||||||||||||||||||||    
T  26240624 gttgataactattgtgtcaaaagagaaacccctaaaatttgaaactttaatactt 26240570  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 24455640 - 24455699
Alignment:
Q  291 tgtacatcttttagaagagtagaatttttgcaaacacctattagttacaattctttaattt 351  Q
    ||||||||||||| || ||| |||| |||||||||| ||||||||| ||||||||||||||    
T  24455640 tgtacatcttttataaaagttgaatgtttgcaaaca-ctattagttgcaattctttaattt 24455699  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 18363435 - 18363382
Alignment:
Q  80 gttgataattatagtgtcagaagagaaactcctgaaatttgaaactttaatact 133  Q
    |||||||| ||| |||||| ||||||||| ||| ||||||||||||||||||||    
T  18363435 gttgataactattgtgtcaaaagagaaacccctaaaatttgaaactttaatact 18363382  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 36599493 - 36599546
Alignment:
Q  80 gttgataattatagtgtcagaagagaaactcctgaaatttgaaactttaatact 133  Q
    |||||||| ||| |||||| ||||||||| ||| ||||||||||||||||||||    
T  36599493 gttgataactattgtgtcaaaagagaaacccctaaaatttgaaactttaatact 36599546  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 34941773 - 34941827
Alignment:
Q  80 gttgataattatagtgtcagaagagaaactcctgaaatttgaaactttaatactt 134  Q
    |||||||| ||| |||||| ||||||||| | | |||||||||||||||||||||    
T  34941773 gttgataactattgtgtcaaaagagaaacccttaaaatttgaaactttaatactt 34941827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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