View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0601_low_2 (Length: 857)

Name: NF0601_low_2
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0601_low_2
NF0601_low_2
[»] chr8 (1 HSPs)
chr8 (90-857)||(40748896-40749649)


Alignment Details
Target: chr8 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 90 - 857
Target Start/End: Original strand, 40748896 - 40749649
Alignment:
Q  90 atcatcatgtagcactcacagttcagaatgaagacatgtccgatgtccagcacatatgatttgtctaatataacatcgacacaatgctgacacaaacagt 189  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40748896 atcaacatgtagcactcacagttcagaatgaagacatgtccgatgtccagcacatatgatatgtctaatataacatcgacacaatgctgacacaaacagt 40748995  T
Q  190 tacattaaatcgcttttttaaaattagagtgaagacacaatttggtttctcacaattttctctcggcccaatacagtctccaacaaaaaataatacttgt 289  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40748996 tacattaaatcgcattttttaaattagagtgaagacacaatttggtttctcacaattttctctcggcccaatacagtctccaacaaaaaataatactcgt 40749095  T
Q  290 actagtctctgacatttttatatcaattagtccatatcttatagtaaattagggactaatttgttctccgtaaaataaattgccacaaactaatgtggta 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749096 actagtctctgacatttttatatcaattagtccatatcttatagtaaattagggactaatttgttctccgtaaaataaattgccacaaactaatgtggta 40749195  T
Q  390 aaaaattgtgagagactaaattgagcatttactcttaaaatcattattggtgtctacatgtggtgtgggtgttgtctcttgtcttagtggtaagcacaac 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749196 aaaaattgtgagagactaaattgagcatttactcttaaaatcattattggtgtctacatgtggtgtgggtgttgtctcttgtcttagtggtaagcacaac 40749295  T
Q  490 atcaacaaaaaatgctggagagttcaattaattagtaccc-aaaataaaaacttgctagaaatagaaagggttaacagaatgaacagcaagtacaaaaca 588  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749296 atcaacaaaaaatgctggagagttcaattaattagtacccaaaaataaaaacttgctagaaatagaaagggttaacagaatgaacagcaagtacaaaaca 40749395  T
Q  589 caaagtgggtatgcaaaaagaacagcaagtacaaacacaataaaagcaatggaaaatggaacaaacccaaatga-nnnnnnnnaccggttttgaaaaatt 687  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||    
T  40749396 caaagtgggtttgcaaaaagaacagcaagtacaaacacaataaaagcaatggaaaatggaacaaacccaaatgatttttttttaccggttttgaaaaatt 40749495  T
Q  688 tcaggcatttcaacaagtgtaagggaaatgcaacccaaaattaacagtaaatcataaagaacatcattcacagtagaaataaaggaaagaagaagaaaag 787  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||                ||||||||||    
T  40749496 tcaggcatttcaaccagtgtaagggaaatgcaacctaaaattaacagtaaatcataaagaacatcattcacagt----------------agaagaaaag 40749579  T
Q  788 gaatacttaccatggtgcgaaagttgatccatctagtaacaaaggtgctagttcccatccccattttttc 857  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749580 gaatacttaccatggtgagaaagttgatccatctagtaacaaaggtgctagttcccatccccattttttc 40749649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2480 times since January 2019
Visitors: 3819