View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0601_low_20 (Length: 430)
Name: NF0601_low_20
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_20 |
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| [»] scaffold0059 (1 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 12638145 - 12637757
Alignment:
| Q |
8 |
cgaataatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12638145 |
cgaaaaatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt |
12638046 |
T |
|
| Q |
108 |
cacaacaaggatcacccatcaacatcactcaagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12638045 |
cacaacaaggatcacccatcaacatcactcaagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaaga |
12637946 |
T |
|
| Q |
208 |
acagctcgtatcgttggcaaatggagaatcagttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaacgtgtttccggtttg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
12637945 |
acagctcgtatcgttggcaaatggagaatcagttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaactagtttctggtttc |
12637846 |
T |
|
| Q |
308 |
aggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaa |
396 |
Q |
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||| ||||| | ||| |||||||| |||||||||| ||| ||| |||||| ||| ||||||||||||||| |||||||||||||| |
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| T |
12637845 |
aggtctaaaattgaggtattgcatagacaaattgatcttatattagtaaacatcatcaatgaacataaagaagctaagtcaaaagcaaa |
12637757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 12611145 - 12610727
Alignment:
| Q |
8 |
cgaataatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt |
107 |
Q |
| |
|
|||| |||||||||||| || ||| | || ||||| ||||||||||| || | || ||||||||||||||| | | ||||||| | |||| ||||||| |
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| T |
12611145 |
cgaaaaatatgcacaatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
12611046 |
T |
|
| Q |
108 |
cacaacaaggatcacccatcaacatcactcaagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaaga |
207 |
Q |
| |
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| |||||||| || ||| |||| || ||||| |||||| |||||| | |||| | ||||| |||||||||||| | |||| |||||||| ||| |
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| T |
12611045 |
cgcaacaagggtcgcccgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagaga |
12610946 |
T |
|
| Q |
208 |
acagctcgtatcgttggcaaatggagaatcagttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaacgtgtttccggtttg |
307 |
Q |
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| || | | ||| | | | ||||||||||| ||| ||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
12610945 |
agagtttggatctattggagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttg |
12610846 |
T |
|
| Q |
308 |
aggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaatgaaagtcaag |
407 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12610845 |
aggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaatgaaagtcaag |
12610746 |
T |
|
| Q |
408 |
gtggagaagaagaagatct |
426 |
Q |
| |
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||||||||||||||||||| |
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| T |
12610745 |
gtggagaagaagaagatct |
12610727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 8 - 396
Target Start/End: Original strand, 15884903 - 15885291
Alignment:
| Q |
8 |
cgaataatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt |
107 |
Q |
| |
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|||| |||||||||||| || ||| | ||||||||| ||| |||||||||| || ||||||||||||| ||| ||||||||||||||||| |||| || |
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| T |
15884903 |
cgaaaaatatgcacaatggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggtt |
15885002 |
T |
|
| Q |
108 |
cacaacaaggatcacccatcaacatcactcaagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaaga |
207 |
Q |
| |
|
| | ||||| ||| |||||||| ||||| || |||||| |||| | | |||| | |||||||||| ||||||||||||||||||| |||||| |
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|
| T |
15885003 |
cgaagcaagggtcatccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaaga |
15885102 |
T |
|
| Q |
208 |
acagctcgtatcgttggcaaatggagaatcagttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaacgtgtttccggtttg |
307 |
Q |
| |
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| || ||| || |||| || ||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||||||||| |
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| T |
15885103 |
agagttcgcgtctttggggaagggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttg |
15885202 |
T |
|
| Q |
308 |
aggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaa |
396 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||| |
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| T |
15885203 |
aggcctaaacttgagaggttgcatagacgtattgatcgaatactagaaaacatcatcattgaacataaagaagcaaattcaaaagcaaa |
15885291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 63278 - 62894
Alignment:
| Q |
8 |
cgaataatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt |
107 |
Q |
| |
|
|||| ||||||||||||||| ||| | || |||| ||| | | |||||||||||| ||||||||||||||| || |||||||||||||||| ||||||| |
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| T |
63278 |
cgaaaaatatgcacaattgagcttttgactcaaagtcgtatcaattcattccggccaataagagaagaagagctctccaatctcatcaaaaggattgatt |
63179 |
T |
|
| Q |
108 |
cacaacaaggatcacccatcaacatcactcaagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaaga |
207 |
Q |
| |
|
|||||||||| || ||||||||||| || ||| ||||| |||| || |||| | | |||||||||||||||| |||||||||||| |||||| |
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|
| T |
63178 |
tgcaacaaggattgcctgtcaacatcactgaacttgtacttacaacaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaaga |
63079 |
T |
|
| Q |
208 |
acagctcgtatcgttggcaaatggagaatcagttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaacgtgtttccggtttg |
307 |
Q |
| |
|
|||| | | || |||| |||| || |||| |||||||||||||||| ||| |||||| ||||||||||| ||||||||||||| | | | | |
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|
| T |
63078 |
acagtttgcgtcattgggaaatataggatcaattggaggaggttttgaaataattgaattatttccttcagccaaatggcttcaacttatatttaatcaa |
62979 |
T |
|
| Q |
308 |
aggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaag |
392 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||||||| ||||| |||||||| |||| | |||||||||||||||||| ||||| |
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|
| T |
62978 |
aggcctaaacttaagaggttgcatagacaacttgatcagatacttgaaaacatcgtcattcaacataaagaagcaaagttaaaag |
62894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 430
Target Start/End: Complemental strand, 23037033 - 23036866
Alignment:
| Q |
266 |
ttgtttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtca |
365 |
Q |
| |
|
|||||||| |||||||||||||| || ||| || | |||||||||||||| ||||||||| | ||| | |||| |||||| ||| |||||||||| ||| |
|
|
| T |
23037033 |
ttgtttccctcagctaaatggctacagcgtattactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaacatcatca |
23036934 |
T |
|
| Q |
366 |
ctgaacataaagaagcaaagt---caaaagcaaatgaaagtcaaggtggagaagaagaagatctcgta |
430 |
Q |
| |
|
||| |||||||| | ||||| ||||||| || || ||||||| ||| |||||||||||||||| |
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|
| T |
23036933 |
atgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtagagtagaagaagatctcgta |
23036866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 430
Target Start/End: Complemental strand, 23039928 - 23039743
Alignment:
| Q |
248 |
ggttttgacataggtgaattgtttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaattgatcaaa |
347 |
Q |
| |
|
||||||||| | || || |||||||| |||||||||||| | || | |||| | ||| |||||||||| || |||||||| ||| | |||| |||||| | |
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|
| T |
23039928 |
ggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcaga |
23039829 |
T |
|
| Q |
348 |
tactagaaaacattgtcactgaacataaagaagcaaagt---caaaagcaaatgaaagtcaaggtggagaagaagaagatctcgta |
430 |
Q |
| |
|
|| |||||||||| ||| ||| |||||||| | ||||| ||||||| || || ||||||| || |||||||||||||||| |
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|
| T |
23039828 |
tattagaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtagaagaagatctcgta |
23039743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 378
Target Start/End: Complemental strand, 23146812 - 23146673
Alignment:
| Q |
239 |
gttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaa |
338 |
Q |
| |
|
|||| ||| ||||||||| | || || |||||||| |||||||||||| | || | |||| | ||| |||||||||| || |||||||| ||| | |||| |
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|
| T |
23146812 |
gttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaa |
23146713 |
T |
|
| Q |
339 |
ttgatcaaatactagaaaacattgtcactgaacataaaga |
378 |
Q |
| |
|
|||||| ||| | |||||||| ||| ||| |||||||| |
|
|
| T |
23146712 |
ctgatcagatatttgaaaacatcatcaatgagcataaaga |
23146673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 23025337 - 23025264
Alignment:
| Q |
68 |
agagaagaagagttcaccaatctcatcaaaagtattgattcacaacaaggatcacccatcaacatcactcaagc |
141 |
Q |
| |
|
||||||||||||||| ||||||| ||||| | |||| ||| | ||||||||||||||||| |||||||||| |
|
|
| T |
23025337 |
agagaagaagagttctccaatcttgtcaaatggattgcttcgaaggaaggatcacccatcaacctcactcaagc |
23025264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 23018138 - 23018070
Alignment:
| Q |
247 |
aggttttgacataggtgaattgtttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaa |
315 |
Q |
| |
|
|||||||||| | || || | ||||||||| |||||||||||||| |||| |||||||||||||||| |
|
|
| T |
23018138 |
aggttttgacttgggagattcgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaa |
23018070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 244 - 383
Target Start/End: Original strand, 5631 - 5770
Alignment:
| Q |
244 |
aggaggttttgacataggtgaattgtttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaattgat |
343 |
Q |
| |
|
||||||||||||| | || || |||||||| || ||||||||||| |||| ||| | |||||||||||||| || |||| | | ||| | |||| |||| |
|
|
| T |
5631 |
aggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaactgat |
5730 |
T |
|
| Q |
344 |
caaatactagaaaacattgtcactgaacataaagaagcaa |
383 |
Q |
| |
|
|||||||| |||||||| ||| ||| ||||||||||||| |
|
|
| T |
5731 |
caaatacttgaaaacatcatcaatgagcataaagaagcaa |
5770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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