View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_22 (Length: 412)
Name: NF0601_low_22
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 45676065 - 45675709
Alignment:
| Q |
13 |
cagagcaagaagagaattccataattgaacttcatgcactcctaggcaacaggtaccaataattgtaataattaaggaactgataagtgttgcatttaga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45676065 |
cagagcaagaagagaattccataattgaacttcatgcactcctaggcaacaggtaccaataattgtaataattaaggaattgataagtgttgcatttaga |
45675966 |
T |
|
| Q |
113 |
tttggcttttaattaagtcatcaagattattttgttacatgcnnnnnnnnnnnnnnctttctacgaatcgaagcgacaatgactaatatactttggtgcc |
212 |
Q |
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||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45675965 |
tttggcttttaattaagtcatcaagattatttt--tattt------------ttttctttctacgaatcgaagcgacaatgactaatatactttggtgcc |
45675880 |
T |
|
| Q |
213 |
ttttgaattatcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgaaataaaaaatctatggaattcaagtctgaagaagaagctaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
45675879 |
ttttgaattatcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgagataaaaaatctatggaattcaagtctgaaaaagaagctaa |
45675780 |
T |
|
| Q |
313 |
agcaaaaaggaattgatccaaacacacaccaaccattctctgagaacaatgacaatgacacaccaaatatt |
383 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45675779 |
agcaaaaaggaattgatccaaacacacaccaaccattctctgagaacaatgacaatgacacaccaaatatt |
45675709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 356
Target Start/End: Original strand, 37963053 - 37963188
Alignment:
| Q |
221 |
tatcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgaaataaaaaatctatggaattcaagtctgaagaagaagctaaagcaaaaa |
320 |
Q |
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|||||| ||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||||||||||||| |||| ||||||| | | | |||| |
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| T |
37963053 |
tatcagatggtctcagattgcagcacaattaccaggaagaactgacaatgagattaaaaatctatggaattcatgtctcaagaagaggttgagacaaagt |
37963152 |
T |
|
| Q |
321 |
ggaattgatccaaacacacaccaaccattctctgag |
356 |
Q |
| |
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|| |||||||||||||||||| ||||| |||||||| |
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| T |
37963153 |
ggcattgatccaaacacacacaaaccactctctgag |
37963188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 16138201 - 16138163
Alignment:
| Q |
249 |
ttacctggaagaacagacaatgaaataaaaaatctatgg |
287 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
16138201 |
ttacctggaagaacagacaatgaaataaaaaatgtatgg |
16138163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 51044663 - 51044772
Alignment:
| Q |
223 |
tcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgaaataaaaaatctatggaattcaagtctgaagaagaagctaaagcaaaaagg |
322 |
Q |
| |
|
|||||||| | || |||||| | || ||||| || |||||||| ||||| |||||||| | |||||||||||| |||||||||| |||| | || |||| |
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| T |
51044663 |
tcaggtgggctcaaattgcatcacaattaccagggagaacagataatgagataaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaagg |
51044762 |
T |
|
| Q |
323 |
aattgatcca |
332 |
Q |
| |
|
||||||||| |
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|
| T |
51044763 |
gattgatcca |
51044772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 16127111 - 16127079
Alignment:
| Q |
249 |
ttacctggaagaacagacaatgaaataaaaaat |
281 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
16127111 |
ttacctggaagaacagacaatgaaataaaaaat |
16127079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 53557711 - 53557754
Alignment:
| Q |
237 |
attgcagctcagttacctggaagaacagacaatgaaataaaaaa |
280 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
53557711 |
attgctgctcagttacctggaagaacagacaatgacataaaaaa |
53557754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 277
Target Start/End: Complemental strand, 20740400 - 20740369
Alignment:
| Q |
246 |
cagttacctggaagaacagacaatgaaataaa |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
20740400 |
cagttacctggaagaacagacaatgaaataaa |
20740369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 277
Target Start/End: Complemental strand, 20732663 - 20732633
Alignment:
| Q |
247 |
agttacctggaagaacagacaatgaaataaa |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
20732663 |
agttacctggaagaacagacaatgaaataaa |
20732633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 332
Target Start/End: Complemental strand, 34626517 - 34626408
Alignment:
| Q |
223 |
tcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgaaataaaaaatctatggaattcaagtctgaagaagaagctaaagcaaaaagg |
322 |
Q |
| |
|
|||||||| | || |||||||| || ||||| || ||||| || ||||| || ||||| | |||||||||||| |||||||||| |||| | || |||| |
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|
| T |
34626517 |
tcaggtgggctcaaattgcagcacaattaccaggtagaacggataatgagattaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaagg |
34626418 |
T |
|
| Q |
323 |
aattgatcca |
332 |
Q |
| |
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||||||||| |
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|
| T |
34626417 |
gattgatcca |
34626408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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