View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_23 (Length: 406)
Name: NF0601_low_23
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 32 - 401
Target Start/End: Complemental strand, 47692082 - 47691709
Alignment:
| Q |
32 |
tgatggatcgagtggttcttggaagagacagacattcttcaacacgccctgtaacttcgcttcttcccttttctttcgcgccaactcgtggttactacta |
131 |
Q |
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| T |
47692082 |
tgatggatcgagtggttcttggaagagacagacattcttcaacacgccctgtaacttcgcttcttcccttttctttcgcgccaactcgtggttactacta |
47691983 |
T |
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| Q |
132 |
atcctctctctctccaacggaaattccacttcttctaacattttattttcactatttg--tatttatttttccactaaaataatatactattgtatacta |
229 |
Q |
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| T |
47691982 |
atcctctctctctccaacggaaattccacttcttctaacattttattttcactatttgtttatttatttttcaactaaaataatatactattgtatacta |
47691883 |
T |
|
| Q |
230 |
ataacctaaaatgcaatagtgttaaatttgttgatgg-tagttttgtcaacaatattcgactt-aaaaaactacaatgataatggattagaatataattt |
327 |
Q |
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|||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47691882 |
ataacctaaaatacaatagtgttaaatttcttgatggatagttttgtcaacaatattcgacttaaaaaaactacaatgataatggattagaatataattt |
47691783 |
T |
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| Q |
328 |
gtactgatttgacatgtacctacttaaagctcaaggacacatcaagaattagtctaaagttgattaaatattct |
401 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||||||| |||||||||| |
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| T |
47691782 |
gtactgatttgacatgtacctatttaaagctcatggacacatcaaaaattagcctaaagttgactaaatattct |
47691709 |
T |
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