View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_24 (Length: 404)
Name: NF0601_low_24
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 30 - 375
Target Start/End: Complemental strand, 54116121 - 54115780
Alignment:
| Q |
30 |
gccacttcatttgtggttcatcaacatttttggatggatactcctaatagatcactcctagaattctgtcatcaaccagtcaattatcaaagaaagtaag |
129 |
Q |
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| T |
54116121 |
gccacttcattagtggttcatcaacatttttggatggatactcctaatagatcactcctagaattctgtcatcaaccagtcaattatcaaagaaagtaag |
54116022 |
T |
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| Q |
130 |
aattatagcagcctgcaacttcaatttttcccaacaagtgctcaaatcctgcataaacaaacaacttaatgtcatataaatttaatgcctaaaacgaagt |
229 |
Q |
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| T |
54116021 |
aattatagcagcctgcaacttcaatttttcccaacaagtgctcaaatcctgcataaacaaacaacttaatgtcatataaatttaatgcctaaaacgaagt |
54115922 |
T |
|
| Q |
230 |
atggctgtttatttaaccaggttttatagctaagtaattgtacacatatataagctcacatgagccaatcattcaattgtaaacaacaaatggaagaaac |
329 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54115921 |
atggctgtttatttaaccaggttttatagc----taattgtacacatatataagcccacatgagccaatcattcaattgtaaacaacaaatggaagaaac |
54115826 |
T |
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| Q |
330 |
ataatgatagattgaacttgaatcatatcgaacataatgagacatg |
375 |
Q |
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| T |
54115825 |
ataatgatagattgaacttgaatcatatcgaacataatgagacatg |
54115780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 23277164 - 23277261
Alignment:
| Q |
119 |
aagaaagtaagaattatagcagcctgcaacttcaatttttcccaacaagtgctcaaatcctgcataaacaaacaacttaatgtcatataaatttaatgc |
217 |
Q |
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||||||||||||| |||||||||||| |||||| ||| | ||| ||||| |||||||||||||||||||||| | |||||||||||| |||||||| |
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| T |
23277164 |
aagaaagtaagaactatagcagcctgaaacttcgattctaccccacaagaactcaaatcctgcataaacaaacca-aaaatgtcatataattttaatgc |
23277261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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