View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_27 (Length: 340)
Name: NF0601_low_27
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 16684102 - 16684427
Alignment:
| Q |
16 |
ataccaaatcaatggagagaaaaataatttacagaacacagaaacacctaagttaatagttctaactacaaatatagcacaccaattat----------- |
104 |
Q |
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| T |
16684102 |
atacaaaatcaatggagtgaaaaataatttacagaacacagaaacacctaatttaatagttctaactacaaatatagcacaccaattattcattggaatt |
16684201 |
T |
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| Q |
105 |
--atggaacttgaacaaatttgaaaaatatggtaaatatccccctagagacattatgaattgaataatcaaatacgccaacaaatctatgaatcaaaact |
202 |
Q |
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| T |
16684202 |
tcatggaacttgaacaaatttgaaaaatttggtaaatatccccctagagatattatgaattgaataatcaaataagctaacaaatctatgaat-gaagct |
16684300 |
T |
|
| Q |
203 |
atccacaactctagattattgacaagcatatctaataactctaaatcgacaagttatgtgtctttaatcaacagttcgtatcggctgctaatgaaggtaa |
302 |
Q |
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||| | |||||||||||||||||||||||||||||||||||| |||| || |||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
16684301 |
atctagaactctagattattgacaagcatatctaataactct-aatccacgagttatacgtatttaatcaacagttcgtatcggctgctaatgaaggtaa |
16684399 |
T |
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| Q |
303 |
gaaaataaaatataacgtaaattaaatt |
330 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
16684400 |
gaaaataaaatataacgtaaattaaatt |
16684427 |
T |
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