View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0601_low_29 (Length: 333)
Name: NF0601_low_29
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_29 |
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| [»] chr8 (8 HSPs) |
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| [»] scaffold0466 (2 HSPs) |
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| [»] scaffold1041 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 25359232 - 25358901
Alignment:
| Q |
1 |
aaaagctatatggacgtaccgaggatatgaattaactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25359232 |
aaaagctatatggacgtaccgaggatatgaattaactaccaaaataattgttggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaac |
25359133 |
T |
|
| Q |
101 |
aataattgtgtgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacactttaggggtcacatatgttcatatttttgacgataagaa |
200 |
Q |
| |
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||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |
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| T |
25359132 |
aattagtgtgtgaaaaacatcacaagatgcatagagtggaagaaattctagaatatcacacttgaggg-tcacatatgttcatattttagacgataagaa |
25359034 |
T |
|
| Q |
201 |
agccaaacttgacgacaagagcaagaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataa |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25359033 |
agccaaacttgacgacaagagctagaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacatcaacaagatataa |
25358934 |
T |
|
| Q |
301 |
attagtcgagatgtggtcttcatcgaagaagga |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
25358933 |
attagtcgagatgtggtcttcatcgaagaagga |
25358901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 25399265 - 25398988
Alignment:
| Q |
1 |
aaaagctatatggacgtaccgaggatatgaattaactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25399265 |
aaaagctatatggacgtaccgaggatatgaattaactaccaaaataattattggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaac |
25399166 |
T |
|
| Q |
101 |
aataattgtgtgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacactttaggggtcacatatgttcatatttttgacgataagaa |
200 |
Q |
| |
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||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |
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| T |
25399165 |
aattagtgtgtgaaaaacatcacaagatgcatagagtggaagaaattctagaatatcacacttga-gggtcacatatgttcatattttagacgataagaa |
25399067 |
T |
|
| Q |
201 |
agccaaacttgacgacaagagcaagaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaaca |
286 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25399066 |
agccaaacttgacgac-------agaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaaca |
25398988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 34 - 301
Target Start/End: Complemental strand, 25650968 - 25650704
Alignment:
| Q |
34 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
133 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||||||||| |
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| T |
25650968 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaataccgcaagatgcata |
25650869 |
T |
|
| Q |
134 |
gagtggaagaaattctagaatatcacactttaggggtcacatatgttcatatttttgacgataagaaagccaaacttgacgacaagagcaagaaattcaa |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
25650868 |
gagtggaagaaattctagaatatcacacttga-gggtcgcatatgttcatattttggacgataagaaagccaaacttgacgaca--agctagaaattcaa |
25650772 |
T |
|
| Q |
234 |
ctttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
25650771 |
ctttgttggttatcatcaaagttcaaagggaatcatgttttaaaaaatgaacaacaacaagatataaa |
25650704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 275
Target Start/End: Complemental strand, 25618243 - 25618003
Alignment:
| Q |
34 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
133 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
25618243 |
aactaccaaaataattgtgggtttaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtatgtgaaaaacaccacaagatgcata |
25618144 |
T |
|
| Q |
134 |
gagtggaagaaattctagaatatcacactttaggggtcacatatgttcatatttttgacgataagaaagccaaacttgacgacaagagcaagaaattcaa |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25618143 |
gagtggaagaaattctagaatatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagctagaaattcaa |
25618045 |
T |
|
| Q |
234 |
ctttgttggttatcatcaaagttcaaagggaatcatgttgtc |
275 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
25618044 |
cttttttggttatcatcaaagttctaagggaatcatgttgtc |
25618003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 224 - 333
Target Start/End: Complemental strand, 25392329 - 25392220
Alignment:
| Q |
224 |
agaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25392329 |
agaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcat |
25392230 |
T |
|
| Q |
324 |
cgaagaagga |
333 |
Q |
| |
|
|||||||||| |
|
|
| T |
25392229 |
cgaagaagga |
25392220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 25495136 - 25495042
Alignment:
| Q |
34 |
aactaccaaaataattgttga-ttgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaaga |
127 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
25495136 |
aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
25495042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25495318 - 25495282
Alignment:
| Q |
1 |
aaaagctatatggacgtaccgaggatatgaattaact |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495318 |
aaaagctatatggacgtaccgaggatatgaattaact |
25495282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25651267 - 25651231
Alignment:
| Q |
1 |
aaaagctatatggacgtaccgaggatatgaattaact |
37 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
25651267 |
aaaagctatatggacgtaccgaagatgtgaattaact |
25651231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 34 - 333
Target Start/End: Original strand, 6221 - 6516
Alignment:
| Q |
34 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
133 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
6221 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaagatgcata |
6320 |
T |
|
| Q |
134 |
gagtggaagaaattctagaatatcacactttaggggtcacatatgttcatatttttgacgataagaaagccaaacttgacgacaagagcaagaaattcaa |
233 |
Q |
| |
|
||||||||||||||||||| |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6321 |
gagtggaagaaattctagattatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagctagaaattcaa |
6419 |
T |
|
| Q |
234 |
ctttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcgaagaagga |
333 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6420 |
ccttgttggttatcatcaaagttcatagggaatcatgttgtcaaaaatg---aacaacaagatataaattagtcgagatgtggtcttcatcgaagaagga |
6516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6034 - 6070
Alignment:
| Q |
1 |
aaaagctatatggacgtaccgaggatatgaattaact |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6034 |
aaaagctatatggacgtaccgaggatatgaattaact |
6070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 263 - 325
Target Start/End: Original strand, 542 - 604
Alignment:
| Q |
263 |
gaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcg |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
542 |
gaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcg |
604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 390 - 426
Alignment:
| Q |
1 |
aaaagctatatggacgtaccgaggatatgaattaact |
37 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
390 |
aaaagctatatggacgtaccgaggatatggattaact |
426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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