View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_3 (Length: 821)
Name: NF0601_low_3
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 29 - 481
Target Start/End: Original strand, 32257536 - 32257994
Alignment:
| Q |
29 |
aatattgaatgattttctcatttttaatatcagtaaaaatatcagtgtatattaataactaaacaaccatttcctctccagaagaactaaccaatcattt |
128 |
Q |
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| T |
32257536 |
aatattgaatgattttctcatttttaatatcagtaaaaatatcagtgtatattaataactaagcaaccatttcctctccagaagaactaaccaatcattt |
32257635 |
T |
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| Q |
129 |
atttctcaggggttacatgtgttctcatttctcacgtatgcggtctctcttgattgttgttttttactttatttgatgtgaaaaagctttttatgttgag |
228 |
Q |
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| T |
32257636 |
atttctcaggggttacatgtgttctcatttctcacgtatgcggtctctcttgattgttgttttttactttatttgatgtgaaaaatctttttatgttgag |
32257735 |
T |
|
| Q |
229 |
aagtactaagggtttgttgtggcaagtgtgggtgtggtgtgggcctaatgaggaaggctggatgatgtgtgtgggtcaggtggtcaaaatgtcaacttat |
328 |
Q |
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| T |
32257736 |
aag---taagggtttgttgtggcaagtgtgggtgtggtgtgggcctaatgaggaaggttgtatgatgtgtgtgggtcaagtggtcaaaatgtcaacttat |
32257832 |
T |
|
| Q |
329 |
attatattatacctaattcaacaaaatttctaaaaatttatgtgcggggcatgtgcccagaaaccctcctacatgcatccgtccatgtatatatatgagt |
428 |
Q |
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| T |
32257833 |
attatattatacct-agtcaacaaaatttctaaaaatttatgtgcggggcatgtgcccagaaaccctcctacatgcatccgtccatgtatatatatgagt |
32257931 |
T |
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| Q |
429 |
atttcggatt----------ggaaacgggaaaccacactccaaattatataatccgatttagg |
481 |
Q |
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| T |
32257932 |
atttcggattatatataatccgaaacgggaaaccacactccaaattatataatccgatttagg |
32257994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 515 - 808
Target Start/End: Original strand, 32258039 - 32258334
Alignment:
| Q |
515 |
ctagcaaaagggaaaaatatatatttccaattttataatacaaaaaccgttaaatacatttcagattataaaatctctaacgagtaaactagattaaaca |
614 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32258039 |
ctagcaaaaaggaaaaatatatatttccaattttataatacaaaaaccgttaaatacatttcagattataaaatctctaacgagtaaaatagattaaaca |
32258138 |
T |
|
| Q |
615 |
tacatactgagtccgctaggtagaatatagcaaagattattaagcaagcagtatagaattatccattgcttctataaagcattgtactttatgttttgct |
714 |
Q |
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| T |
32258139 |
tacatactgaatccgctaggtagaatatagcaaagattattaagcaagcagtatagaattatccattgcttctataaagcattgtactttatgttttgct |
32258238 |
T |
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| Q |
715 |
ctgaacttataattc--agagagtttcatattcatatcagaatatctgcaagctgaaacaatttaacttgtttatcccatacagcctccctatgct |
808 |
Q |
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| T |
32258239 |
ctgaacttataattcagagagagtttcatattcatatcagaatatctgcaagctgaaacaatttaactagtttaccccatacagcctccctgtgct |
32258334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 42164123 - 42164085
Alignment:
| Q |
33 |
ttgaatgattttctcatttttaatatcagtaaaaatatc |
71 |
Q |
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| T |
42164123 |
ttgaatgattttctcatttttaatatcaataaaaatatc |
42164085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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