View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_32 (Length: 332)
Name: NF0601_low_32
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 25792542 - 25792839
Alignment:
| Q |
12 |
agagagatatagagcaaataaagtgttgaattgatgtttagatataaatagtgtacaaatatcgtggatacatctcttcaaaagatatcgttaacgatgt |
111 |
Q |
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| T |
25792542 |
agagagatatagagcaaataaagtgttgaattgatgtttagaaataaatggtgtacaaatatcgtggatagatctcttcaaaaggtatcgtgaacgatgt |
25792641 |
T |
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| Q |
112 |
ggtcacattgactacaaattgagatactaatgttacgcttttgggttgggacgttgaaggagtattaaaaatgaaagtttgtgtttga-------tcgct |
204 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25792642 |
ggtcacattgactacaaattgacatactaatgttacgcttttgggttgggacgttgaaggagtattaaaaatgaaagtttgtgtttgatctctgctcgct |
25792741 |
T |
|
| Q |
205 |
aaaaaattatctccctgtaacaaactaactactaacattagcttatcaaaaacgaaaagtatacattccttttctaattgtaagatttttggttgtatg |
303 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25792742 |
aacaaattatctccctgtaacaaactaactactaacattagcttatc-aaaacaaaaggtatacattccttttctaattgtaagatttttggttgtatg |
25792839 |
T |
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