View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0601_low_33 (Length: 325)
Name: NF0601_low_33
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_33 |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr5 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 164 - 325
Target Start/End: Complemental strand, 45349985 - 45349824
Alignment:
| Q |
164 |
ttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacgaaaa |
263 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45349985 |
ttattctttggcaacatcaaacacatgaatttaaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacgaaaa |
45349886 |
T |
|
| Q |
264 |
tcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataac |
325 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45349885 |
ttaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataac |
45349824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 161 - 325
Target Start/End: Complemental strand, 28245417 - 28245253
Alignment:
| Q |
161 |
ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
260 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28245417 |
ttcttattctttggcaacatcaaacatatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
28245318 |
T |
|
| Q |
261 |
aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataac |
325 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28245317 |
aaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataac |
28245253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 161 - 325
Target Start/End: Complemental strand, 11947482 - 11947318
Alignment:
| Q |
161 |
ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
260 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11947482 |
ttcttattctttggcaacatctaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
11947383 |
T |
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| Q |
261 |
aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataac |
325 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11947382 |
aaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataac |
11947318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 161 - 325
Target Start/End: Complemental strand, 17716342 - 17716178
Alignment:
| Q |
161 |
ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17716342 |
ttcttattctttggcaacatcaaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
17716243 |
T |
|
| Q |
261 |
aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataac |
325 |
Q |
| |
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|||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
17716242 |
aaattaaacacatagaatttcaaaacaaaaatcaaacaatgtgaacgaaatagatgattcataac |
17716178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 164 - 325
Target Start/End: Complemental strand, 14667393 - 14667232
Alignment:
| Q |
164 |
ttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacgaaaa |
263 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14667393 |
ttattctttggcaacatcaaagacatgaatttcaaagaaattataaatcacaaatgccaaacagaataagaagaatttgagttaaattgtgaaacgaaaa |
14667294 |
T |
|
| Q |
264 |
tcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataac |
325 |
Q |
| |
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| |||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
14667293 |
ttaaacacgtagaatttcaaaacaaaaatcaaacaatgtgaacgaaatagatgattcataac |
14667232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 161 - 325
Target Start/End: Original strand, 1658097 - 1658261
Alignment:
| Q |
161 |
ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
260 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1658097 |
ttcttattctttggcaacatcaaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
1658196 |
T |
|
| Q |
261 |
aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataac |
325 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
1658197 |
aaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgactcataac |
1658261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 27832679 - 27832624
Alignment:
| Q |
30 |
agcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattc |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27832679 |
agcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattc |
27832624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 27845290 - 27845227
Alignment:
| Q |
32 |
caatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattcgtttataattc |
96 |
Q |
| |
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||||||||||||||||||||| || |||||||||| |||||||||||| |||| |||||||||| |
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| T |
27845290 |
caatgcttccttcattgtttt-attcagagcatcgacttattgtgcacatattcatttataattc |
27845227 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 161 - 325
Target Start/End: Complemental strand, 23758981 - 23758817
Alignment:
| Q |
161 |
ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23758981 |
ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccgaacagaacaagaagaatttgagttaaattgtgaaacga |
23758882 |
T |
|
| Q |
261 |
aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataac |
325 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23758881 |
aaattaaacacatagaatatcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataac |
23758817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 161 - 325
Target Start/End: Complemental strand, 23824441 - 23824277
Alignment:
| Q |
161 |
ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23824441 |
ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccgaacagaacaagaagaatttgagttaaattgtgaaacga |
23824342 |
T |
|
| Q |
261 |
aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataac |
325 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23824341 |
aaattaaacacatagaatatcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataac |
23824277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 161 - 325
Target Start/End: Original strand, 24046487 - 24046651
Alignment:
| Q |
161 |
ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24046487 |
ttcttattctttggcaacatcaaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
24046586 |
T |
|
| Q |
261 |
aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataac |
325 |
Q |
| |
|
|||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
24046587 |
aaattaaacacataacatttcaaaacaaaaatcaaacaatgtgaacgaaatagatgattcataac |
24046651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 161 - 325
Target Start/End: Complemental strand, 23758392 - 23758228
Alignment:
| Q |
161 |
ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23758392 |
ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacaa |
23758293 |
T |
|
| Q |
261 |
aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataac |
325 |
Q |
| |
|
|||| |||||||||||||||||||| |||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
23758292 |
aaattaaacacatagaatttcaaaaaaaaaattaaacaatgtgaacgaaatagatgattcataac |
23758228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 161 - 325
Target Start/End: Complemental strand, 23823849 - 23823684
Alignment:
| Q |
161 |
ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23823849 |
ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacaa |
23823750 |
T |
|
| Q |
261 |
aaatcaaacacatagaatttc-aaaacaaaattcaaacaatgtgaatgaaatagatgattcataac |
325 |
Q |
| |
|
|||| |||||||||||||||| |||| |||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
23823749 |
aaattaaacacatagaatttcaaaaaaaaaaattaaacaatgtgaacgaaatagatgattcataac |
23823684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 221 - 325
Target Start/End: Complemental strand, 9238704 - 9238601
Alignment:
| Q |
221 |
caaacagaacaagaagaatttgagttaaattgtgaaacgaaaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
9238704 |
caaacagaacaagaagaatttgagttaaattgtgaaacgaaaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaa-agatgattc |
9238606 |
T |
|
| Q |
321 |
ataac |
325 |
Q |
| |
|
||||| |
|
|
| T |
9238605 |
ataac |
9238601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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