View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0601_low_34 (Length: 321)
Name: NF0601_low_34
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_34 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 341457 - 341295
Alignment:
| Q |
92 |
taatcaacgccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagc |
191 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
341457 |
taatcaatgccgttaacatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagc |
341358 |
T |
|
| Q |
192 |
aatacacgaaaagaggaattgatcaaataccttgcatgcctctgtcattttcttctctgctcc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
341357 |
aatacacgaaaagaggaattgatcaaataccttgcatgcctcagtcattttcttctcttctcc |
341295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 249
Target Start/End: Complemental strand, 333165 - 333008
Alignment:
| Q |
92 |
taatcaacgccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagc |
191 |
Q |
| |
|
||||||||| ||| |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
333165 |
taatcaacgtcgtaagcaaatcaacatgatgagcatcgtcactttcaacattgatttcatttttgttacaattttgctttagctcttcgcgctttgaagc |
333066 |
T |
|
| Q |
192 |
aatacacgaaaagaggaattgatcaaataccttgcatgcctctgtcattttcttctct |
249 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
333065 |
tatacacgaaaataggaatttatcaaatactttgcatgcctcggtcatttttttctct |
333008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 100 - 249
Target Start/End: Complemental strand, 337411 - 337262
Alignment:
| Q |
100 |
gccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacg |
199 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| | |||| |||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
337411 |
gccgttagcaaatcaacatgatgagcatcattactttgaccattaatttcatttttgttaccgtttttctttagctcttcgcattttgaagctatacacg |
337312 |
T |
|
| Q |
200 |
aaaagaggaattgatcaaataccttgcatgcctctgtcattttcttctct |
249 |
Q |
| |
|
|| | ||||||||||||||||| |||||||| || |||||||| |||||| |
|
|
| T |
337311 |
aatataggaattgatcaaatactttgcatgcttcagtcatttttttctct |
337262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2992 times since January 2019
Visitors: 3831