View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_36 (Length: 317)
Name: NF0601_low_36
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 2938365 - 2938505
Alignment:
| Q |
38 |
cgtgttgcagactacgagatgaagatggtcatatcatcgagaatactcaggtaacattttcttccatgttgggtttgctttataagtttgtagtttcgat |
137 |
Q |
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| T |
2938365 |
cgtgttgcagactacgagatgaagatggtcatatcatcgagaatactcaggtaacattttcttccatgttgggtttgctttataagtttgtagtttcgat |
2938464 |
T |
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| Q |
138 |
gnnnnnnncagcatatagtttggtatcatttacaattttgt |
178 |
Q |
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| T |
2938465 |
gaaaaaaacagcatatagtttggtatcatttacaattttgt |
2938505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 2939017 - 2939056
Alignment:
| Q |
202 |
tttcaccttccgcttctgactattgtttaaaatatctctg |
241 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
2939017 |
tttcaccttccgcttctgactattgtttaaaatctctctg |
2939056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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