View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_39 (Length: 305)
Name: NF0601_low_39
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 2 - 283
Target Start/End: Complemental strand, 38875570 - 38875289
Alignment:
| Q |
2 |
tttatatgatttagttaaataaaaactatgttaaaatggtgaaaggaaaatttgcagttgagtagtattagttgctactttctatttgccttcttatgag |
101 |
Q |
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| T |
38875570 |
tttatatgatttagttaaataaaaactatgttaaaatggtgaaaggaaaatttgcagttgagtagtattagttgctactttctatttgccttcttatgag |
38875471 |
T |
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| Q |
102 |
ttgtgaattttcgacaaatcaggctagctgcattaagctggaatggtggaggttctttcatatttacttcaagcagtgctccatatgattgtaatgataa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38875470 |
ttgtgaattttcgacaaatcaggctagctgcattaagctggaatggtggaggttctttcatatttacttcaagtagtgctccatatgattgtaatgataa |
38875371 |
T |
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| Q |
202 |
tggaccgtgtgatgaggtgggtcatacatccaaattgtcctattattttgtttgttttgatttaaattcaagagatgatgat |
283 |
Q |
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| T |
38875370 |
tggaccgtgtgatgaggtgtgtcatacatccaaattatcctattattttgtttgttttgatttaaattcaagagatgatgat |
38875289 |
T |
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Back To:
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Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 91 - 283
Target Start/End: Complemental strand, 9821232 - 9821038
Alignment:
| Q |
91 |
cttcttatgagttg---tgaattttcgacaaatcaggctagctgcattaagctggaatggtggaggttctttcatatttacttcaagcagtgctccatat |
187 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |
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| T |
9821232 |
cttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttctttcgtatttacgtcaagcagtgctccatat |
9821133 |
T |
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| Q |
188 |
gattgtaatgataatggaccgtgtgatgaggtgggtcatacatccaaattgtcctattattttgtttgttttgatttaaattcaagagatgatgat |
283 |
Q |
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| T |
9821132 |
gattgtaatgataacgggccgtgtgatgag-tgcgtcctacatttgaactatcatattattttgcttgttttgatttgagttgaagagataatgat |
9821038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 38693715 - 38693787
Alignment:
| Q |
211 |
tgatgaggtgggtcatacatccaaattgtcctattattttgtttgttttgatttaaattcaagagatgatgat |
283 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||| |
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| T |
38693715 |
tgatgaggtgggtcatacatccaaattgtcgtattattttgcttgttttaatttaaattgaagagatgatgat |
38693787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 38693615 - 38693718
Alignment:
| Q |
90 |
ccttcttatgagttg---tgaattttcgacaaatcaggctagctgcattaagctggaatggtggaggttctttcatatttacttcaagcagtgctccata |
186 |
Q |
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||||||||||||||| ||| ||||| | ||| |||| ||||||| |||||||||||||||| ||||||||| |||||| |||||||||||| |||| |
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| T |
38693615 |
ccttcttatgagttgatgtgatttttcaaaaaaccaggttagctgctttaagctggaatggtgaaggttcttttgcatttacgtcaagcagtgcttcata |
38693714 |
T |
|
| Q |
187 |
tgat |
190 |
Q |
| |
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|||| |
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|
| T |
38693715 |
tgat |
38693718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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