View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_40 (Length: 305)
Name: NF0601_low_40
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 38875547 - 38875821
Alignment:
| Q |
1 |
ttttatttaactaaatcatataaaatgaaatagccttagaacatccaagttgatctaaccaaccatttcaatactactaaaaatcgatgtcaacgatcaa |
100 |
Q |
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| T |
38875547 |
ttttatttaactaaatcatataaa-tgaaatagccttagaacatccaagttgatctaaccaaccatttcaatactactaaaaatcgatgtcaacaatcaa |
38875645 |
T |
|
| Q |
101 |
aagtggagcattcaattaatattacatcctttcacacaacaagttttgtatgaaattcgttcatcgcacaccacttttaaaccaaaaagtttgacaagat |
200 |
Q |
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| T |
38875646 |
aagtggagcattcaattaatattacatcctttcacacaacaagttttgtatcaaattcgttcatcgcacaccacttttaaaccaaaaagtttgacaagat |
38875745 |
T |
|
| Q |
201 |
aaaccttcattaaaacatttctaaattgtaaaaattaattaaattaatcctaagatttgttacctaacgttatcag |
276 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
38875746 |
aaaccttcattaaaacatttctaaatagtaaaaattaattaaattaatcctaagatttattacctaacattatcag |
38875821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 9821249 - 9821351
Alignment:
| Q |
73 |
actactaaaaatcgatgtcaacgatcaaaagtggagcattcaattaatattacatcctttcacacaacaagttttgtatgaaattcgttcatcgcacacc |
172 |
Q |
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||||||||||| ||||||||| |||||||| || ||||||||||||| ||||||||||| |||| |||||||| | || |||||||||||||| || |
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| T |
9821249 |
actactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagcaatttcgttcatcgcacgcc |
9821348 |
T |
|
| Q |
173 |
act |
175 |
Q |
| |
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||| |
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| T |
9821349 |
act |
9821351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 9821352 - 9821421
Alignment:
| Q |
205 |
cttcattaaaacatttctaaattgtaaaaattaattaaattaatcctaagatttgttacctaacgttatc |
274 |
Q |
| |
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|||||||||||| |||||| || ||| | | |||| ||||||||||||||||||||||||||| ||||| |
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| T |
9821352 |
cttcattaaaacctttctatatagtacacactaatggaattaatcctaagatttgttacctaacattatc |
9821421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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