View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_41 (Length: 304)
Name: NF0601_low_41
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_41 |
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| [»] scaffold0466 (2 HSPs) |
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| [»] scaffold1041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 25359306 - 25359012
Alignment:
| Q |
9 |
agcagagatcatacgattattttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
104 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25359306 |
agcagagatcataagatt-ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
25359208 |
T |
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| Q |
105 |
tatgaattaactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattgtgtgaaaaacaccacaa |
204 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||| ||||| |
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| T |
25359207 |
tatgaattaactaccaaaataattgttggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaa |
25359108 |
T |
|
| Q |
205 |
gatgcatagagtggaagaaattctagaatatcacacttgagggggcacatatgttcatattttagacgataagaaaaccaaacttgacgacaagagc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25359107 |
gatgcatagagtggaagaaattctagaatatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagc |
25359012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 25399339 - 25399050
Alignment:
| Q |
9 |
agcagagatcatacgattattttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
104 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25399339 |
agcagagatcataagatt-ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
25399241 |
T |
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| Q |
105 |
tatgaattaactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattgtgtgaaaaacaccacaa |
204 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||| ||||| |
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| T |
25399240 |
tatgaattaactaccaaaataattattggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaa |
25399141 |
T |
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| Q |
205 |
gatgcatagagtggaagaaattctagaatatcacacttgagggggcacatatgttcatattttagacgataagaaaaccaaacttgacgaca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25399140 |
gatgcatagagtggaagaaattctagaatatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttgacgaca |
25399050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 113 - 301
Target Start/End: Complemental strand, 25618243 - 25618056
Alignment:
| Q |
113 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
212 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
25618243 |
aactaccaaaataattgtgggtttaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtatgtgaaaaacaccacaagatgcata |
25618144 |
T |
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| Q |
213 |
gagtggaagaaattctagaatatcacacttgagggggcacatatgttcatattttagacgataagaaaaccaaacttgacgacaagagc |
301 |
Q |
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| T |
25618143 |
gagtggaagaaattctagaatatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagc |
25618056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 113 - 298
Target Start/End: Complemental strand, 25650968 - 25650784
Alignment:
| Q |
113 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
212 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| ||| ||||||||||| |
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| T |
25650968 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaataccgcaagatgcata |
25650869 |
T |
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| Q |
213 |
gagtggaagaaattctagaatatcacacttgagggggcacatatgttcatattttagacgataagaaaaccaaacttgacgacaag |
298 |
Q |
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|||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
25650868 |
gagtggaagaaattctagaatatcacacttga-gggtcgcatatgttcatattttggacgataagaaagccaaacttgacgacaag |
25650784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 25495136 - 25495042
Alignment:
| Q |
113 |
aactaccaaaataattgttga-ttgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattgtgtgaaaaacaccacaaga |
206 |
Q |
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| T |
25495136 |
aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
25495042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 25495366 - 25495282
Alignment:
| Q |
28 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
116 |
Q |
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| T |
25495366 |
ttttttcaagaataacaaaggtacaatcgagagaaccagcttgcagataa----aagctatatggacgtaccgaggatatgaattaact |
25495282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 25651318 - 25651231
Alignment:
| Q |
25 |
ttattttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
116 |
Q |
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| T |
25651318 |
ttattttttcaagaataacaaaggtactatcgagagaaccagcttgcaga----taaaagctatatggacgtaccgaagatgtgaattaact |
25651231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 113 - 301
Target Start/End: Original strand, 6221 - 6408
Alignment:
| Q |
113 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattgtgtgaaaaacaccacaagatgcata |
212 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
6221 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaagatgcata |
6320 |
T |
|
| Q |
213 |
gagtggaagaaattctagaatatcacacttgagggggcacatatgttcatattttagacgataagaaaaccaaacttgacgacaagagc |
301 |
Q |
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||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6321 |
gagtggaagaaattctagattatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagc |
6408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 5996 - 6070
Alignment:
| Q |
38 |
aataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
116 |
Q |
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|||||||||| || || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5996 |
aataacaaaggtaaaatcgagagaaccagcttacagataa----aagctatatggacgtaccgaggatatgaattaact |
6070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 342 - 426
Alignment:
| Q |
28 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
342 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcaga----taaaagctatatggacgtaccgaggatatggattaact |
426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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