View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_45 (Length: 296)
Name: NF0601_low_45
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 33108671 - 33108925
Alignment:
| Q |
13 |
aatatagcttatttaaagagtttgactttattttattttgttatgtaagtagtttatacattgaccctcatatgactagaacttatactatactataagt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
33108671 |
aatatagcttatttaaagagtttgactttattttattttgttatgtaagtagtttatacattgacactcatatgactagaatttatactatactataagt |
33108770 |
T |
|
| Q |
113 |
acttagttatactgtttatcttaacatggtctatatggaattgcttgcttatatagaaacttacatatttttcttgtgcagtgaaattgtaatcaggtaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33108771 |
acttagttatactgtttatcttaacatggtctatatggaattgcttgcttatatagaaacttacatatttttcttgtgcagtgaaattgtaatcaggtaa |
33108870 |
T |
|
| Q |
213 |
caaagttggtgatggcaggacaactaggagtgcttaatgcactcgatgtggcgaa |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33108871 |
caaagttggtgatggcaggacaactaggagtgcttaatgcactcgatgtggcgaa |
33108925 |
T |
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