View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0601_low_47 (Length: 288)
Name: NF0601_low_47
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 27167519 - 27167317
Alignment:
| Q |
63 |
tcttttaattagatttattacttcctcaatcttcaattagaagacctcttgagnnnnnnnngtctctttttataaaacaatattcaaatttcaatgtaca |
162 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27167519 |
tcttttaattaggtttattactatctccatcttcaattagaagacctcttgagttttttttgtccctttttataaaacaatattcaaatttcaatgtaca |
27167420 |
T |
|
| Q |
163 |
ttaattactttatcactatacatgtatttatctaatgtttttgtgcgctatgtaa-aaaatactccctccgtctctatatacaagcaccaatttgatgga |
261 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27167419 |
tcaattactttatcactatacatgtatttatctaatgtttttgtgcgctatgtaaaaaaatactccttccgtctctatatacaagcaccaatttgatgga |
27167320 |
T |
|
| Q |
262 |
tct |
264 |
Q |
| |
|
||| |
|
|
| T |
27167319 |
tct |
27167317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 256
Target Start/End: Complemental strand, 27170325 - 27170223
Alignment:
| Q |
154 |
caatgtacattaattactttatcactatacatgtatttatctaatgtttttgtgcgctatgtaaaaaatactccctccgtctctatatacaagcaccaat |
253 |
Q |
| |
|
|||||| ||||||||||||||| |||||| ||||||||||||||| |||||||| ||| ||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
27170325 |
caatgtgcattaattactttattactataaatgtatttatctaatatttttgtgtaatatataataactactccctccgtccttatatacaagcaccaat |
27170226 |
T |
|
| Q |
254 |
ttg |
256 |
Q |
| |
|
||| |
|
|
| T |
27170225 |
ttg |
27170223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 27213823 - 27213711
Alignment:
| Q |
136 |
aaaacaatattcaaatttcaatgtacattaattactttatcactatacatgtatttatct--aatgtttttgtgcgctatgtaaaaaatactccctccgt |
233 |
Q |
| |
|
||||| |||||||||| ||||||| |||||||||||| |||||||||||||||||||| | ||| ||||| ||| ||||||| || |||||||||||| |
|
|
| T |
27213823 |
aaaaccatattcaaatatcaatgtgcattaattacttcatcactatacatgtatttatattaaatatttttatgcaatatgtaataactactccctccgt |
27213724 |
T |
|
| Q |
234 |
ctctatatacaag |
246 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
27213723 |
ccctatatacaag |
27213711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 27162662 - 27162785
Alignment:
| Q |
128 |
ctttttataaaacaatattcaaatttcaatgtacattaa-ttactttatcactatacatgtatttatct--aatgtttttgtgcgctatgtaaaaaatac |
224 |
Q |
| |
|
||||||||||||| || |||||||||||||||| ||||| ||| |||||| |||||| | ||||||||| ||| ||||||||| ||||||| || ||| |
|
|
| T |
27162662 |
ctttttataaaaccattttcaaatttcaatgtatattaatttaatttatcgctatacctatatttatcttaaatatttttgtgcaatatgtaataactac |
27162761 |
T |
|
| Q |
225 |
tccctccgtctctatatacaagca |
248 |
Q |
| |
|
| | ||||| |||||||||||| |
|
|
| T |
27162762 |
tacaaccgtccatatatacaagca |
27162785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 27170404 - 27170352
Alignment:
| Q |
63 |
tcttttaattagatttattacttcctcaatcttcaattagaagacctcttgag |
115 |
Q |
| |
|
||||| |||||| ||||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
27170404 |
tctttcaattaggtttattactacctctatcttcaattagaagaccttttgag |
27170352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 27162595 - 27162647
Alignment:
| Q |
63 |
tcttttaattagatttattacttcctcaatcttcaattagaagacctcttgag |
115 |
Q |
| |
|
||||| |||||| ||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
27162595 |
tctttcaattaggtttattactaccttcatcttcaattagaagaccttttgag |
27162647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 142 times since January 2019
Visitors: 3833