View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_48 (Length: 274)
Name: NF0601_low_48
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 70 - 246
Target Start/End: Original strand, 27219651 - 27219826
Alignment:
| Q |
70 |
atgctcacgagactatcacaaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagag |
169 |
Q |
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| T |
27219651 |
atgctcacgggactaccacaaggccacattaatatgtacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatatttaatagag |
27219750 |
T |
|
| Q |
170 |
ttttacactgttgagtatgttcaaattaaatccttacactaaattcaattcaatccgtctacctatgaaatgttcat |
246 |
Q |
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| T |
27219751 |
ttttacactgttgagtatgtacaaattaaatccttacactaaattcaattcagt-cgtctacctatgaaatgttcat |
27219826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 27217018 - 27217153
Alignment:
| Q |
86 |
cacaaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagagttttacactg-ttgag |
184 |
Q |
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||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| | ||| |
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| T |
27217018 |
cacaaggccactttattatgttcctaaatatctccacaaatatttacatgatgagatattattcaatgtacattgtaaatacagttttacactgatcgag |
27217117 |
T |
|
| Q |
185 |
tatgttcaaattaaatccttacactaaattcaattc |
220 |
Q |
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| T |
27217118 |
tatgtacaaattaaatccttacactaaattcaattc |
27217153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 24047803 - 24047831
Alignment:
| Q |
191 |
caaattaaatccttacactaaattcaatt |
219 |
Q |
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| T |
24047803 |
caaattaaatccttacactaaattcaatt |
24047831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 27219282 - 27219254
Alignment:
| Q |
45 |
catagtcacactctatacaaataccatgc |
73 |
Q |
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| T |
27219282 |
catagtcacactctatacaaataccatgc |
27219254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 37580461 - 37580592
Alignment:
| Q |
89 |
aaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagagttttacactg-ttgagtat |
187 |
Q |
| |
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|||||||| ||| ||||| ||| |||||| |||||||||||||| |||||||||| ||| || ||||| | || | |||||||||||| |||||||| |
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| T |
37580461 |
aaggccactttattatgctcctttatatctctacaaatatttacacgatgagatatgatttgatatacatataaaagacagttttacactgattgagtat |
37580560 |
T |
|
| Q |
188 |
gttcaaattaaat-ccttacactaaattcaat |
218 |
Q |
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| |||||||||| || ||||||||||||||| |
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| T |
37580561 |
atacaaattaaatcccctacactaaattcaat |
37580592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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