View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_59 (Length: 229)
Name: NF0601_low_59
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 46890979 - 46891200
Alignment:
| Q |
1 |
ttgtctctttgctttgtcttgcataaatgtaccttcctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcacatttct |
100 |
Q |
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| T |
46890979 |
ttgtccctttgccttgtcttgcataaatgtaccttcctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcaaatttct |
46891078 |
T |
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| Q |
101 |
gccataaatgggctgtggcatggcggactttgtgttagttgccatagtctataccatgactattatacccggcttgtttccaccatatgccgcagctcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46891079 |
gccataaatgggctgtggcatggcggactttgtgctagtggccatagtctataccatgactattatacccggcttgtttccaccatatgccgcagctcca |
46891178 |
T |
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| Q |
201 |
tgtttataagccatattattcg |
222 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
46891179 |
tgtttataagccatatttttcg |
46891200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 46873629 - 46873710
Alignment:
| Q |
65 |
ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccata |
146 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||| | || ||||||||| |||||||||| |||||| |||| |
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| T |
46873629 |
ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggtggactttgtgctagttggcata |
46873710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 48232215 - 48232061
Alignment:
| Q |
65 |
ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccatagtctataccatgactatt |
164 |
Q |
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|||| |||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||||| ||| | ||||||| ||||||||||||| |
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| T |
48232215 |
ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtc--taccatgactatt |
48232118 |
T |
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| Q |
165 |
atacccggcttgtttccaccatatgccgcagctccatgtttataagccatattattcg |
222 |
Q |
| |
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|||||||||||| ||||||||||||| | |||||||||||||||||||| ||| |||| |
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| T |
48232117 |
atacccggcttg-ttccaccatatgcagaagctccatgtttataagccagatttttcg |
48232061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 48237255 - 48237101
Alignment:
| Q |
65 |
ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccatagtctataccatgactatt |
164 |
Q |
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|||| |||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||||| ||| | ||||||| ||||||||||||| |
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| T |
48237255 |
ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtc--taccatgactatt |
48237158 |
T |
|
| Q |
165 |
atacccggcttgtttccaccatatgccgcagctccatgtttataagccatattattcg |
222 |
Q |
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|||||||||||| ||||||||||||| | |||||||||||||||||||| ||| |||| |
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| T |
48237157 |
atacccggcttg-ttccaccatatgcagaagctccatgtttataagccagatttttcg |
48237101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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