View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0601_low_62 (Length: 202)

Name: NF0601_low_62
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0601_low_62
NF0601_low_62
[»] chr5 (1 HSPs)
chr5 (1-187)||(25471482-25471668)
[»] chr7 (2 HSPs)
chr7 (1-109)||(9270721-9270829)
chr7 (65-102)||(26168712-26168749)
[»] chr4 (2 HSPs)
chr4 (21-187)||(47507594-47507756)
chr4 (51-83)||(30176437-30176469)
[»] scaffold0477 (1 HSPs)
scaffold0477 (1-97)||(73-169)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-174)||(25376-25545)
[»] chr6 (1 HSPs)
chr6 (1-97)||(4649056-4649152)
[»] chr8 (2 HSPs)
chr8 (53-109)||(5337799-5337855)
chr8 (1-96)||(24194599-24194694)
[»] chr3 (2 HSPs)
chr3 (53-109)||(43731564-43731620)
chr3 (136-193)||(26701306-26701363)
[»] scaffold0057 (1 HSPs)
scaffold0057 (5-187)||(7538-7718)
[»] chr1 (1 HSPs)
chr1 (68-108)||(3906944-3906984)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 25471482 - 25471668
Alignment:
Q  1 accatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactatcaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25471482 accatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactatcaga 25471581  T
Q  101 aattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctat 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25471582 aattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctat 25471668  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 9270829 - 9270721
Alignment:
Q  1 accatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactatcaga 100  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| ||||  |||||   |  |||||||||||||| ||||| |||||||||||||||  |    
T  9270829 accatgtgaaaacacaacatttgacaaatatatcccaacattctttaaagattgttactaacttttgttaatagttattgcgaatgaaacaactatcgaa 9270730  T
Q  101 aattgtctc 109  Q
    |||||||||    
T  9270729 aattgtctc 9270721  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 26168749 - 26168712
Alignment:
Q  65 ttgttaatagtcattgcaaatgaaacaactatcagaaa 102  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  26168749 ttgttaatagtcattgcaaatgagacaaatatcagaaa 26168712  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 47507756 - 47507594
Alignment:
Q  21 ttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactatcagaaattgtctctattgaattaa 120  Q
    |||||| ||||||  |||||||| ||||  |||||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||||  |||    ||    
T  47507756 ttggcagatatatatcaacattctttaaagattgtccttgactcttgttaatagtcattgcgaatgaaacaactatcagaaactgtctccgttg----aa 47507661  T
Q  121 acataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctat 187  Q
    |  | |||| | |||| || || ||| ||| ||| ||||| ||||||||||||||||| ||||||||    
T  47507660 atttgaaaggagtcctgacgtcggaacgtgcaagggataatcttggtataaaaactttctcgcctat 47507594  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 30176437 - 30176469
Alignment:
Q  51 attgtctttggcttttgttaatagtcattgcaa 83  Q
    |||||||||| ||||||||||||||||||||||    
T  30176437 attgtctttgacttttgttaatagtcattgcaa 30176469  T

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Target: scaffold0477 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 73 - 169
Alignment:
Q  1 accatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactatc 97  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||| | |   | |||| ||| ||||||||| |||||||||| |  ||||||||||||    
T  73 accatgtgaaaacacaaaatttggcaaatatatcccaactttcttcagagactgtccttgacttttgttagtagtcattgcgagagaaacaactatc 169  T

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Target: scaffold0121 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 25545 - 25376
Alignment:
Q  1 accatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactatcaga 100  Q
    ||||||||||||||||  | |||| ||||||||  |||| ||| | ||  | |||| ||| |||||||||||||||||||| || ||||||||||||  |    
T  25545 accatgtgaaaacacatgacttggaaaatatatctcaactttcttcaaagactgtccttgacttttgttaatagtcattgcgaaagaaacaactatcgaa 25446  T
Q  101 aattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaaa 174  Q
    || ||||||  |||    |||  ||||||  ||| | ||||| ||||| ||||||||||| |||||||||||||    
T  25445 aactgtctccgttg----aaatttaaaaggtatcatgacatcagaaggagtaagagataatcttggtataaaaa 25376  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 4649056 - 4649152
Alignment:
Q  1 accatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactatc 97  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||| | |   | |||| ||| ||||||||| |||||||||| |  ||||||||||||    
T  4649056 accatgtgaaaacacaaaatttggcaaatatatcccaactttcttcagagactgtccttgacttttgttagtagtcattgcgagagaaacaactatc 4649152  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 5337855 - 5337799
Alignment:
Q  53 tgtctttggcttttgttaatagtcattgcaaatgaaacaactatcagaaattgtctc 109  Q
    |||| ||| |||||||||||||||||||| || |||||||||||| |||| ||||||    
T  5337855 tgtccttgacttttgttaatagtcattgcgaaagaaacaactatcggaaactgtctc 5337799  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 24194694 - 24194599
Alignment:
Q  1 accatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactat 96  Q
    ||||||||||||||||  | |||| |||||||| |||||  |  |||   |||||| ||| |||||||||||||||||||| || |||||||||||    
T  24194694 accatgtgaaaacacaggacttggtaaatatatcccaactatttttagagattgtcattgacttttgttaatagtcattgcgaaagaaacaactat 24194599  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 43731564 - 43731620
Alignment:
Q  53 tgtctttggcttttgttaatagtcattgcaaatgaaacaactatcagaaattgtctc 109  Q
    |||| ||| ||||||||||||||||||||||| |||||| ||||| ||| |||||||    
T  43731564 tgtccttgacttttgttaatagtcattgcaaaagaaacagctatcggaacttgtctc 43731620  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 26701306 - 26701363
Alignment:
Q  136 taacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatgctact 193  Q
    ||||||| || |||| |||||||||||| ||||| |||||||||||||| ||| ||||    
T  26701306 taacatcagatggtgaaagagataacctgggtatgaaaactttttcgccaatgttact 26701363  T

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Target: scaffold0057 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 187
Target Start/End: Original strand, 7538 - 7718
Alignment:
Q  5 tgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatg-aaacaactatcagaaat 103  Q
    ||||||||||||  | |||||| |||||| ||||  ||| ||||  |||||||||  |||||||||||||||||||  |||| ||||  ||||||||||     
T  7538 tgtgaaaacacaggacttggcagatatatcccaaagttctttaaagattgtctttaacttttgttaatagtcattgtgaatgaaaacggctatcagaaac 7637  T
Q  104 tgtct-ctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctat 187  Q
    ||||| | ||||    |||  | |||| |||||| |  || ||||||| ||||||||| ||| ||||||||||||| ||||||||    
T  7638 tgtctcccattg----aaatttgaaaggaatcctgatgtcggaaggtgcaagagataatcttagtataaaaactttctcgcctat 7718  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 3906944 - 3906984
Alignment:
Q  68 ttaatagtcattgcaaatgaaacaactatcagaaattgtct 108  Q
    ||||||||||||||||||||||||||||   ||||||||||    
T  3906944 ttaatagtcattgcaaatgaaacaactaaatgaaattgtct 3906984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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