View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_7 (Length: 585)
Name: NF0601_low_7
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_7 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 110 - 585
Target Start/End: Original strand, 40892812 - 40893280
Alignment:
| Q |
110 |
gacaaacattcttgagaattcatgaaacgataatgtttctatagatttgtttcaatctttcatggacataacataatttcttcaccttaaacttttatca |
209 |
Q |
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| T |
40892812 |
gacaaacattcttgagaattcatgaaacgttaatgtttctatagatttgtttcaatctttcatggacat-----aatttcttcaccttaaacttttatca |
40892906 |
T |
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| Q |
210 |
gaaatgctaatggtgtcacattaaaaatgaaaattacatgtatgtcatttttattttctttgcacaaacgtcatttttgttatatgatactaatataata |
309 |
Q |
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| T |
40892907 |
gaaatgctaacggtgtcacattaaaaatgaaaattacatgtctgtcatttttattttctttgcacaaacgtcatttttgttatatgatactaatataata |
40893006 |
T |
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| Q |
310 |
taactgatccctcttcttctcttctctcggtgacggatcttgaaccgactacctctaagttgtagggcaaaccttacaaccaaatggcttctcgggagac |
409 |
Q |
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| T |
40893007 |
aaactgatccctcttcttctcttctctcggtgacgggtcttgaaccgactacctctaagttgtagggcaaaccttacaatcaaatggcttctcaggagac |
40893106 |
T |
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| Q |
410 |
atgcaatataataaaactgatgtccaccatgttttttctaatatgccatcggtcgatctcttaatctcattcatttggagaaatatatgctcgttttgca |
509 |
Q |
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| T |
40893107 |
atgcaatataataaaactgatgtccaccatgttttttctaatatgtcatcggtcgatctcttaatctcattcatttggaaaaatatatgctcattttgta |
40893206 |
T |
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| Q |
510 |
aataaaacaaatggatgctaaagcctnnnnnnnnnntaggagaaaaccctcattttcgcccttgaaagtaacactc |
585 |
Q |
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| T |
40893207 |
aataaaacaaatggatgctaaagcct--aaaaaacataggagtaaaccctcattttcgtccttgaaagtgacactc |
40893280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 410
Target Start/End: Complemental strand, 45654955 - 45654876
Alignment:
| Q |
331 |
ttctctcggtgacggatcttgaaccgactacctctaagttgtagggcaaaccttacaaccaaatggcttctcgggagaca |
410 |
Q |
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| T |
45654955 |
ttctctcgatgccgggtctcgaaccgagtacctctaggttgttgggcaaaccttgcaaccaagtgacttctcgggagaca |
45654876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 37144569 - 37144620
Alignment:
| Q |
359 |
tacctctaagttgtagggcaaaccttacaaccaaatggcttctcgggagaca |
410 |
Q |
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| T |
37144569 |
tacctctaagttgtagggcacaccttgcaaccaagtgacttctcaggagaca |
37144620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 7702798 - 7702871
Alignment:
| Q |
317 |
tccctcttcttctcttctctcggtgacggatcttgaaccgactacctctaagttgtagggcaaaccttacaacc |
390 |
Q |
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| T |
7702798 |
tccctcttcttctcttctctcaatgccgcgtctcgaaccgaattcctctaagttgtacgacaaactttacaacc |
7702871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 32024450 - 32024515
Alignment:
| Q |
347 |
tcttgaaccgactacctctaagttgtagggcaaaccttacaaccaaatggcttctcgggagacatg |
412 |
Q |
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| T |
32024450 |
tcttgaaccgagttcctcaaggttgtaggataaaccttacaaccaaataacttctcgagagacatg |
32024515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 416
Target Start/End: Complemental strand, 9859895 - 9859811
Alignment:
| Q |
332 |
tctctcggtgacggatcttgaaccgactacctctaagttgtagggcaaaccttacaaccaaatggcttctcgggagacatgcaat |
416 |
Q |
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| T |
9859895 |
tctcttggtgccgggtctcgaaccgagaacctcttggttgtagggcaaacttcacaaccaagtgacttctcaggagacaagcaat |
9859811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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