View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0601_low_8 (Length: 550)
Name: NF0601_low_8
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0601_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 53 - 467
Target Start/End: Original strand, 5655934 - 5656348
Alignment:
| Q |
53 |
aatctccattccaagaagaatacagtatagtgatttcaaaataagcttcttgtggaaatgcatggttccccaaaaaaggaccaggaagaggcagagaagt |
152 |
Q |
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| T |
5655934 |
aatctccattccaagaagaatacagtatagtgatttcaaaataagcttcttgtggaaatgcatggttccccaaaaaaggaccaggaagaggcagagaagt |
5656033 |
T |
|
| Q |
153 |
cctaataacagaagcaacacttgtagaagtgttgttaagatgnnnnnnncactcttttaaaccaggattgagtctaaccttctgcatgaattcatttgat |
252 |
Q |
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| T |
5656034 |
cctaataacagaagcaacacttgtagaagtgttgttaggatgaaaaaaacactcttttaaaccaggattgagtctaaccttctgcatgaattcatttgat |
5656133 |
T |
|
| Q |
253 |
ccttgacaaacttcccagtttatttcagcctcattttctcttccaaattcatcactacctccacatgatcctaatagtgttgatgaagttgannnnnnng |
352 |
Q |
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| T |
5656134 |
ccttgacaaacttcccagtttatttcagcctcattttctcttccaaattcatcactacctccacatgatcctaatagtgttgatgaagttgatttttttg |
5656233 |
T |
|
| Q |
353 |
atgaaatattgctcatgtagctagtgaaagcaaatcttgaccatccattttctatagcatcagaagctaggtatggatgatcattccaactgaacaaatc |
452 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
5656234 |
atgaaatattactcatgtagctagtgaaagcaaatcttgaccatccattttctatagcatcagaagctagatatggatgatcattccagttgaacaaatc |
5656333 |
T |
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| Q |
453 |
ttttcttcctttgct |
467 |
Q |
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| T |
5656334 |
ttttcttcctttgct |
5656348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 47047714 - 47047669
Alignment:
| Q |
370 |
tagctagtgaaagcaaatcttgaccatccattttctatagcatcag |
415 |
Q |
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| T |
47047714 |
tagctagtgaaagcaaatcttgaccatccattttcaacagcatcag |
47047669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 47047996 - 47047944
Alignment:
| Q |
85 |
atttcaaaataagcttcttgtggaaatgcatggttccccaaaaaaggaccagg |
137 |
Q |
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|||||||||||||||||||||||||| ||| ||| || |||| ||||||||| |
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| T |
47047996 |
atttcaaaataagcttcttgtggaaaaacatagtttcctaaaacaggaccagg |
47047944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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