View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0601_low_9 (Length: 536)

Name: NF0601_low_9
Description: NF0601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0601_low_9
NF0601_low_9
[»] chr3 (3 HSPs)
chr3 (222-527)||(39163008-39163313)
chr3 (261-359)||(2609534-2609632)
chr3 (261-372)||(2623643-2623754)
[»] chr1 (1 HSPs)
chr1 (120-197)||(50931765-50931842)
[»] chr8 (4 HSPs)
chr8 (263-374)||(26367915-26368026)
chr8 (261-359)||(16518152-16518250)
chr8 (261-294)||(16526757-16526790)
chr8 (261-293)||(16568348-16568380)
[»] scaffold1157 (1 HSPs)
scaffold1157 (261-293)||(755-787)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 222 - 527
Target Start/End: Original strand, 39163008 - 39163313
Alignment:
Q  222 atggaattgtggcaacatataacctgttgatttggtatgacaggaacaacatcaaagaggggcagctaatggcattacaatgactactatgtcagcattc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39163008 atggaattgtggcaacatataacctgttgatttggtatgacaggaacaacatcaaagaggggcagctaatggcattgcaatgactactatgtcagcattc 39163107  T
Q  322 aaaacaataggtcctgctggaggcggtgcattgtgagtttccctttgatttattttgcttctctgacctatgagccattgttaacaccttagaattgatt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39163108 aaaacaataggtcctgctggaggcggtgcattgtgagtttccctttgatttattttgtttctctgacctatgagccattgttaacaccttagaattgatt 39163207  T
Q  422 gcctctatagggaattcatattgtaaacgatccttgcttaaagaaagtgcatgtgtacatgttttatacataactgtcatatagataaataaatctcaat 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39163208 gcctctatagggaattcatattgtaaacgatccttgcttaaagaaagtgcatgtgtacatgttttatacataactgtcatatagataaataaatctcaat 39163307  T
Q  522 tcattt 527  Q
    ||||||    
T  39163308 tcattt 39163313  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 2609534 - 2609632
Alignment:
Q  261 acaggaacaacatcaaagaggggcagctaatggcattacaatgactactatgtcagcattcaaaacaataggtcctgctggaggcggtgcattgtgagt 359  Q
    |||||| |||| |||||||||||||||||| |||||| | ||||||   ||||||  |||||||||||| ||||| |||||||| |||||| |||||||    
T  2609534 acaggagcaacgtcaaagaggggcagctaacggcattgctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtgagt 2609632  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 2623643 - 2623754
Alignment:
Q  261 acaggaacaacatcaaagaggggcagctaatggcattacaatgactactatgtcagcattcaaaacaataggtcctgctggaggcggtgcattgtgagtt 360  Q
    |||||| |||||||||||||| | ||| |||||| ||   || ||| |||||||||||| |||   ||| ||||| ||||||||||| ||| |||||||     
T  2623643 acaggatcaacatcaaagaggtgtagcaaatggcctttgcataactgctatgtcagcatgcaaggtaattggtccagctggaggcggcgcaatgtgagta 2623742  T
Q  361 tccctttgattt 372  Q
    ||||||||||||    
T  2623743 tccctttgattt 2623754  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 50931842 - 50931765
Alignment:
Q  120 aatcaatgcctggaactcgttggatcaaccttctcattcaacaagattgtcgtcttgaagtaatcaattctctctgta 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50931842 aatcaatgcctggaactcgttggatcaaccttctcattcaacaagattgtcgtcttgaagtaatcaattctctctgta 50931765  T

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Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 26368026 - 26367915
Alignment:
Q  263 aggaacaacatcaaagaggggcagctaatggcattacaatgactactatgtcagcattcaaaacaataggtcctgctggaggcggtgcattgtgagtttc 362  Q
    ||||||||||||||||||||||||||||||||||| | ||||||   ||||||  |||||||||||| ||||| |||||||| |||||| ||||||| |     
T  26368026 aggaacaacatcaaagaggggcagctaatggcattgctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtgagtgta 26367927  T
Q  363 cctttgatttat 374  Q
    || |||||||||    
T  26367926 ccattgatttat 26367915  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 16518250 - 16518152
Alignment:
Q  261 acaggaacaacatcaaagaggggcagctaatggcattacaatgactactatgtcagcattcaaaacaataggtcctgctggaggcggtgcattgtgagt 359  Q
    |||||||||||| ||||||||||| |||||||||||| | |||||  |||||||   ||||||| | || || ||||||| ||| ||| || |||||||    
T  16518250 acaggaacaacaccaaagaggggctgctaatggcatttctatgacagctatgtctctattcaaagcgattggacctgctgcaggtggtacaatgtgagt 16518152  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 16526790 - 16526757
Alignment:
Q  261 acaggaacaacatcaaagaggggcagctaatggc 294  Q
    |||||||||||| |||||||||||||||||||||    
T  16526790 acaggaacaacaccaaagaggggcagctaatggc 16526757  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 16568380 - 16568348
Alignment:
Q  261 acaggaacaacatcaaagaggggcagctaatgg 293  Q
    ||||||||||||||||||||| |||||||||||    
T  16568380 acaggaacaacatcaaagaggagcagctaatgg 16568348  T

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Target: scaffold1157 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 755 - 787
Alignment:
Q  261 acaggaacaacatcaaagaggggcagctaatgg 293  Q
    ||||||||||||||||||||| |||||||||||    
T  755 acaggaacaacatcaaagaggagcagctaatgg 787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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