View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0602-INSERTION-1 (Length: 1020)
Name: NF0602-INSERTION-1
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-INSERTION-1 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0059 (1 HSPs) |
| |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 924; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 924; E-Value: 0
Query Start/End: Original strand, 8 - 1020
Target Start/End: Original strand, 12609255 - 12610268
Alignment:
| Q |
8 |
agccacacacgtgcaaaaagtaagtattaagccagtgatttgcatagttaccttgtatatattgatttgatggttgataactactttcaaattttcaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12609255 |
agccacacacgtgcaaaaagtaagtattaagccagtgatttgcatagttaccttgtatatattgatttgatggttgataactactttcaaattttcaatt |
12609354 |
T |
|
| Q |
108 |
tgtgattagtacagagcttgaaagattttgtagtagagccaccatattgtttttctgaatttctaaggaccaccatattagtttctgagtatatagaacc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12609355 |
tgtgattagtacagagcttgaaagattttgtagtagagccaccatattgtttttctgaatttctaaggaccaccatattagtttctgagtatatagaacc |
12609454 |
T |
|
| Q |
208 |
taatttatgtttttaatagtcattcaaactaaattcacaaatgcttcatgcagtttattgaaaactaaatttactttgtcaacat--gttggctcctaat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12609455 |
taatttatgtttttaatagtcattcaaactaaattcacaaatgcttcatgcagtttattgaaaactaaatttactttgtcaacatatgttggctcctaat |
12609554 |
T |
|
| Q |
306 |
acagttgccaccgataccggacacgttagaatttagaaagcactaagctctacaaaatcagcaaagatgaacaaatctttatttccaaagtaaatatgga |
405 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12609555 |
acagttgccaccgataccggacacattagaatttagaaagcactaagctctacaaaatcagcaaagatgaacaaatctttatttccaaagtaaatatgga |
12609654 |
T |
|
| Q |
406 |
acaacaaattcaaggtaatacttatagcctttgcttgtatgtatggttttatcttgccacagaacgaagaggagctctaggtatcaaatacaagtcatct |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12609655 |
acaacaaattcaaggtaatacttatagcctttgcttgtatgtatggttttatcttgccacagaaggaagaggagctgtaggtatcaaatacaagtcatct |
12609754 |
T |
|
| Q |
506 |
tttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaagcttccaatcaaagtgatacaacatcaatgcaa |
605 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12609755 |
tttcttttgacggtcgctccaaattgctcagtcatgtctaagtcctcacctttcattccattgggaagcttccaatcaaagtgatacaacatcaatgcaa |
12609854 |
T |
|
| Q |
606 |
gtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aat |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12609855 |
gtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaat |
12609954 |
T |
|
| Q |
704 |
agagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttg |
803 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12609955 |
agagctaccgatgaatctctccggataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttg |
12610054 |
T |
|
| Q |
804 |
attggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaac |
903 |
Q |
| |
|
||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12610055 |
attgg--tatacgatacccatcaatctcacatgcttgtccacattctcttggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaac |
12610152 |
T |
|
| Q |
904 |
tgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttggaatatttctcttacctcatcttgtgctttcttcatcactct |
1003 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12610153 |
tgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgtt-gaatatatctcttacctcatcttgtgctttcttcatcactct |
12610251 |
T |
|
| Q |
1004 |
tttatcccttaccaact |
1020 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12610252 |
tttatcccttaccaact |
12610268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 471 - 1020
Target Start/End: Complemental strand, 15886147 - 15885599
Alignment:
| Q |
471 |
gaagaggagctctaggtatcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattggg |
570 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||| |||||| ||| |
|
|
| T |
15886147 |
gaagaggagcagtaggtatcaagtacaagtcatcttttcttttgacggtcgctccaaattgctcggtcatgtctaagtcctcacctttcgttccatcggg |
15886048 |
T |
|
| Q |
571 |
aagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaag |
670 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | || || |||||||||||||||| |||||| |
|
|
| T |
15886047 |
aagcctccaatcaaagtgatacaacaacaatgcaagtgccaactcaacatttaccaaaccaaatgttatgcccgggcatattcttcttccagaaccaaaa |
15885948 |
T |
|
| Q |
671 |
ggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttc |
768 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15885947 |
ggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttggatctcttc |
15885848 |
T |
|
| Q |
769 |
caatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagtaaaagagga |
868 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
15885847 |
caatcgcccatgcattgactatcaccttgcttttggttggtatat--gataaccatcaatctcacatgcttgttcacattctcttggaagtaaaagagga |
15885750 |
T |
|
| Q |
869 |
cctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttggaatatt |
968 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | || || ||||| ||||||| |||| ||| ||| |
|
|
| T |
15885749 |
gctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattccttttgtgtt-gaacatt |
15885651 |
T |
|
| Q |
969 |
tctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaact |
1020 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15885650 |
tctcttacttcatcttgtgctttcttcatcactctttcatcccttaccaact |
15885599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 485 - 1020
Target Start/End: Original strand, 12636830 - 12637361
Alignment:
| Q |
485 |
ggtatcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaagcttccaatcaa |
584 |
Q |
| |
|
|||||||| ||||||||| ||||||||| || | || |||||| |||||||||||| || ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
12636830 |
ggtatcaagtacaagtcactttttcttttaacattagccccaaattgctcagtcatgtccaaatcctcacctttcattccattgggaagcctccaatcaa |
12636929 |
T |
|
| Q |
585 |
agtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaa |
684 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
12636930 |
agtgatataacaacaatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaa |
12637029 |
T |
|
| Q |
685 |
attattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgca |
782 |
Q |
| |
|
|||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
12637030 |
attatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgca |
12637129 |
T |
|
| Q |
783 |
ttgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaa |
882 |
Q |
| |
|
|| ||||||||||| |||||| |||||||| |||||| ||||| |||| |||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
12637130 |
tttactatcaccttacttttggctggtatat--gatacccttcaatttcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaa |
12637224 |
T |
|
| Q |
883 |
ccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttggaatatttctcttacctcatc |
982 |
Q |
| |
|
||||| ||||||||||| ||| |||| ||||| ||||||||||||| | ||||| ||||| |||||||| |||| |||||||| ||| || |||| |
|
|
| T |
12637225 |
ccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagttcctttcttgtt-gaatatttttctcacttcata |
12637323 |
T |
|
| Q |
983 |
ttgtgctttcttcatcactcttttatcccttaccaact |
1020 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
12637324 |
ttgtgctttcttcatcactcttggatcccttactaact |
12637361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 255; Significance: 1e-141; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 474 - 1020
Target Start/End: Original strand, 61971 - 62516
Alignment:
| Q |
474 |
gaggagctctaggtatcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaag |
573 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||| || ||| |||||||| ||||||||||| ||||| || | |||||||||||||||||| |
|
|
| T |
61971 |
gaggagcaataggtatcaagtacaagtcatcttttcttttaactgtcactccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaag |
62070 |
T |
|
| Q |
574 |
cttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaaggga |
673 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||||| | | |||||||||||| | || ||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
62071 |
cttccaatcaaagtgatacaacaacattgcaagtgccagctcaagactcatcaaaccaaatttactgcctgggcatattctttttccagcaccaaaagga |
62170 |
T |
|
| Q |
674 |
atgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttccaa |
771 |
Q |
| |
|
|||||||| ||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |
|
|
| T |
62171 |
atgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttggatctcttccga |
62270 |
T |
|
| Q |
772 |
tcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagtaaaagaggacct |
871 |
Q |
| |
|
| ||||||||||| ||||||| ||| |||| |||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
62271 |
ttgcccatgcattaactatcagctttgttttcattggtatat--gatacccatcaatctcacatgcttctctacattctcttggaagtaaaagagcacct |
62368 |
T |
|
| Q |
872 |
ggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttggaatatttct |
971 |
Q |
| |
|
|| ||||||||||| | |||||||||||||| |||||| | || ||||||||| |||||| |||| |||| | ||| |||||||| | |||||||| |
|
|
| T |
62369 |
ggggggtgtaacctcagggtctctttcacaattgacttcacgtatttgagttcatgcatacaactttcatcaaaagctcccttcatgtt-gtatatttct |
62467 |
T |
|
| Q |
972 |
cttacctcatcttgtgctttcttcatcactcttttatcccttaccaact |
1020 |
Q |
| |
|
|| || ||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
62468 |
ctcacttcatcttgtgctttcttcatcactcttggatctcttaccaact |
62516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 2e-79; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 560 - 1018
Target Start/End: Original strand, 23145824 - 23146281
Alignment:
| Q |
560 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
659 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||||||| | || |||||| ||| ||||| |||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23145824 |
attccactaggaagcttccagtcaaaatgatacaataacattgcaaggaccagctcaatatttgtcaaaccaaatgtgctccctggacatattcttcttc |
23145923 |
T |
|
| Q |
660 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
757 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23145924 |
cagcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtccagtagtt |
23146023 |
T |
|
| Q |
758 |
tggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaa |
857 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||| |||||| | || || ||||| | ||| |||| || |||| | |||| | ||||||||| || | |
|
|
| T |
23146024 |
tggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgt--gataaccatttatatcacattcttgactacattctctcggta |
23146121 |
T |
|
| Q |
858 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
957 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||| |||||| | || |||||| |||||||||| || |||||||| ||||| |||||||||| |
|
|
| T |
23146122 |
acaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcat |
23146221 |
T |
|
| Q |
958 |
gttggaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaa |
1018 |
Q |
| |
|
|| ||| | ||||| ||||||||||||||||||||||| | |||| |||| ||||||| |
|
|
| T |
23146222 |
-tttgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaa |
23146281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 560 - 1014
Target Start/End: Original strand, 23038945 - 23039398
Alignment:
| Q |
560 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
659 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||||||||| || |||||| |||| ||||| | || |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
23038945 |
attccacttggaagcttccagtcaaaatgatacaacaacattgcaagggccagctcaatacttctcaaaccaaatgtgctccctgggcatattcttcttc |
23039044 |
T |
|
| Q |
660 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
757 |
Q |
| |
|
| |||||||| |||||||||||| ||||| | ||||| ||| ||| | ||| | | |||||||||||||||||| ||||| || ||||||||||| || |
|
|
| T |
23039045 |
cggcaccaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtccagtaatt |
23039144 |
T |
|
| Q |
758 |
tggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaa |
857 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||||||||| || || || ||||| | ||| |||| ||||||| || ||| | |||||||||||| | |
|
|
| T |
23039145 |
tggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgt--gataaccatttatctcacatgtttgacgacattctcttggca |
23039242 |
T |
|
| Q |
858 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
957 |
Q |
| |
|
| |||||||| ||||||||||||||| | ||| ||||| ||||||||||| |||||| |||||||||| || |||||||| ||||| |||||||||| |
|
|
| T |
23039243 |
gcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctttcat |
23039342 |
T |
|
| Q |
958 |
gttggaatatttctcttacctcatcttgtgctttcttcatcactcttttatccctta |
1014 |
Q |
| |
|
|| ||| | ||||| ||||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
23039343 |
-tttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccctta |
23039398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 560 - 997
Target Start/End: Original strand, 23036074 - 23036510
Alignment:
| Q |
560 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
659 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||||||||| || ||||| |||| |||| |||| |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
23036074 |
attccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttc |
23036173 |
T |
|
| Q |
660 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
757 |
Q |
| |
|
| |||||||| |||||||||||||| ||| ||||||||||| ||||| ||| ||||||||||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
23036174 |
cggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatt |
23036273 |
T |
|
| Q |
758 |
tggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaa |
857 |
Q |
| |
|
|||||||||| |||| ||||| ||||| | | | ||||| || || || ||||| | ||| |||| ||| ||| |||||| |||| |||||||| | |
|
|
| T |
23036274 |
tggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgt--gataaccatttatcacacatgcttgaacacactctcttggta |
23036371 |
T |
|
| Q |
858 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
957 |
Q |
| |
|
| |||||||| ||||||||||||||| | ||| ||||| || ||||| || |||||| ||||||| || |||||||| ||||| || |||||||||| |
|
|
| T |
23036372 |
gcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttgatacaattctcttcgacccttcctttcat |
23036471 |
T |
|
| Q |
958 |
gttggaatatttctcttacctcatcttgtgctttcttcat |
997 |
Q |
| |
|
|| ||| | ||||| |||||| |||||||||||||||| |
|
|
| T |
23036472 |
-tttgaaaacctctctcacctcagcttgtgctttcttcat |
23036510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 560 - 997
Target Start/End: Original strand, 23148662 - 23149098
Alignment:
| Q |
560 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
659 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||||||| || ||| || |||| ||||| |||| ||||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
23148662 |
attccactgggaagcttccagtcaaaatgatacaacaacattgctagggccagctcaatatttctcaaaccaaatatgctccctgggcatattcttcttc |
23148761 |
T |
|
| Q |
660 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
757 |
Q |
| |
|
| |||||||| ||||||||||| || ||| ||||||| ||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23148762 |
cggcaccaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtccagtagtt |
23148861 |
T |
|
| Q |
758 |
tggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaa |
857 |
Q |
| |
|
|| ||||||| |||| ||||| ||||||| |||||| || | || || || || | ||| |||| || |||| ||||| | ||||||||| || | |
|
|
| T |
23148862 |
tgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgt--gataaccatttatatcacacgcttgactacattctctcggta |
23148959 |
T |
|
| Q |
858 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
957 |
Q |
| |
|
|||||||| | |||||||||| ||||||||| ||||| |||||| | || |||||| |||||||||| || |||||||| ||||| ||||||||||| |
|
|
| T |
23148960 |
acaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctttcat |
23149059 |
T |
|
| Q |
958 |
gttggaatatttctcttacctcatcttgtgctttcttcat |
997 |
Q |
| |
|
|| ||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
23149060 |
-tttgaaaacctctctcacctcatcttgtgctttcttcat |
23149098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 560 - 997
Target Start/End: Original strand, 23024176 - 23024612
Alignment:
| Q |
560 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
659 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||| | |||||| || | ||||||| || |||||||||| |||| |||||||||||||||| || |
|
|
| T |
23024176 |
attccattaggaagcttccaatcaaaatggtacaacaactttgcaagggctagctcaacacttcgcaaaccaaatatgctccctggacatattcttcgtc |
23024275 |
T |
|
| Q |
660 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
757 |
Q |
| |
|
| |||||||| ||||| |||||||| ||| ||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
23024276 |
ccgcaccaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatt |
23024375 |
T |
|
| Q |
758 |
tggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaa |
857 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||||||||| | || |||| || | ||| || || |||| || || ||| |||||||||| || | |
|
|
| T |
23024376 |
tggatctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgt--cataaccgtctatcttacatgattgagcacattctctcggta |
23024473 |
T |
|
| Q |
858 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
957 |
Q |
| |
|
|||||| || | |||||||||||||| | ||| ||||| |||| ||| || |||||| | |||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
23024474 |
ttaaaagtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattgatacaattctcttcaacccttcctttcat |
23024573 |
T |
|
| Q |
958 |
gttggaatatttctcttacctcatcttgtgctttcttcat |
997 |
Q |
| |
|
|| ||| || |||| |||||| |||||||||||||||| |
|
|
| T |
23024574 |
att-gaaaatctctcgcacctcagcttgtgctttcttcat |
23024612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 560 - 1014
Target Start/End: Original strand, 23139950 - 23140403
Alignment:
| Q |
560 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
659 |
Q |
| |
|
|||||| | ||||||||||||||||| | | |||||| |||||| | ||||||||||||| ||||||||||| |||| ||||| |||||||||| || |
|
|
| T |
23139950 |
attccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtc |
23140049 |
T |
|
| Q |
660 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
757 |
Q |
| |
|
| |||||||| |||||||||||||||| | ||||||| ||| ||||| | | || |||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
23140050 |
ccgcaccaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtt |
23140149 |
T |
|
| Q |
758 |
tggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaa |
857 |
Q |
| |
|
||||||||| | || |||||||||||||| | |||||| | || | |||||| | ||| |||| ||||||| |||||| ||||| |||||||| | |
|
|
| T |
23140150 |
tggatctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgt--gataaccatgtatctcacatgcttgaccacactctcttggta |
23140247 |
T |
|
| Q |
858 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
957 |
Q |
| |
|
| |||||||| | |||| ||||||||| ||||| ||||| || | ||| || |||||| ||| || || || |||||||| ||||| |||||||||| |
|
|
| T |
23140248 |
gcaaaagaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataatggagctcgttgatgcaattttcatcaacccttcctttcat |
23140347 |
T |
|
| Q |
958 |
gttggaatatttctcttacctcatcttgtgctttcttcatcactcttttatccctta |
1014 |
Q |
| |
|
|| ||| | ||||| ||||||||||| |||||||||| | |||| |||||||| |
|
|
| T |
23140348 |
-tttgaaaacctctctcacctcatcttgcactttcttcattattcttggatccctta |
23140403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 522 - 945
Target Start/End: Original strand, 23016928 - 23017351
Alignment:
| Q |
522 |
ctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatt |
621 |
Q |
| |
|
|||||||| |||||||||||| | || || | ||| |||||| |||||||||||| ||||| |||||||||| || ||||| |||||||||||||| |
|
|
| T |
23016928 |
ctccaaattgctcagtcatgtccagttcgtcacatttgattccaccgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatt |
23017027 |
T |
|
| Q |
622 |
tatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaat |
719 |
Q |
| |
|
| ||||||| ||||| || || || ||||||||||||||| ||||||| |||||||| || || ||| ||||||| ||| |||| | | | |||||| |
|
|
| T |
23017028 |
tctcaaaccgaatgtactcccagggcatattcttcttccaccaccaaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaat |
23017127 |
T |
|
| Q |
720 |
ctctctggataaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatata |
819 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||| | || ||||| ||||| | ||||||||| | || | |||||| | ||| |
|
|
| T |
23017128 |
ctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgt--gata |
23017225 |
T |
|
| Q |
820 |
cccatcaatctcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtg |
919 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||| || |||||||| ||| ||| ||||| || | ||| ||||| |||||||| || | |||| || |
|
|
| T |
23017226 |
accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg |
23017325 |
T |
|
| Q |
920 |
agttcatttatacaattttcttcaac |
945 |
Q |
| |
|
||||||||||| || ||||| ||||| |
|
|
| T |
23017326 |
agttcatttatgcatttttcatcaac |
23017351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 488 - 879
Target Start/End: Original strand, 22971783 - 22972174
Alignment:
| Q |
488 |
atcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaagcttccaatcaaagt |
587 |
Q |
| |
|
|||||||||| ||||||||||||| | || | ||||||||| |||||||||| | || ||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
22971783 |
atcaaatacatgtcatcttttcttataacagaagctccaaatagctcagtcatatccaaatcctcacatttcattccaccaggaagcttccaatcaaagt |
22971882 |
T |
|
| Q |
588 |
gatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaatt |
687 |
Q |
| |
|
|| |||| | || ||||||| || ||||||||| || |||| | | | |||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22971883 |
gagacaataagaaagcaagtgtcagttcaacatttgccataccatagttaatgcctggacaaattcttcttccagcaccaaatggaatgtactcaaaatt |
22971982 |
T |
|
| Q |
688 |
attccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattg |
785 |
Q |
| |
|
| |||||| | || ||| ||| | || ||||| || ||||||||| | ||||| |||||||| || |||||||| |||||||| ||||| |||||| |
|
|
| T |
22971983 |
tgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttggatcccttccaattgcccaagcattg |
22972082 |
T |
|
| Q |
786 |
actatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtg |
879 |
Q |
| |
|
| ||||||| | |||||||||||||| | ||| ||||||||||||| ||||||||||| | ||||| | |||||||||||| |||||||| |
|
|
| T |
22972083 |
attatcaccctacttttgattggtatgt--gataaccatcaatctcacaagcttgtccacacacccttggtactaaaagaggaccaggagggtg |
22972174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 560 - 997
Target Start/End: Original strand, 23032618 - 23033039
Alignment:
| Q |
560 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
659 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||||| || || || |||| ||||| |||| ||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
23032618 |
attccatcaggaagcgtccagtcaaaatgatacaacaacatcgcgagggccagctcaatatttctcaaaccaaatgtactccctgggcatattcttcttc |
23032717 |
T |
|
| Q |
660 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
757 |
Q |
| |
|
| ||||||||||||||||||||||||||| | ||||| ||| ||||| ||| |||||||| |||||||||||||||||||| || |
|
|
| T |
23032718 |
cggcaccaaagggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaat---------------ctctctggttcagtccagtagtt |
23032802 |
T |
|
| Q |
758 |
tggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaa |
857 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||| | ||| |||| ||||||| |||||| || ||||||||||| | |
|
|
| T |
23032803 |
tggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgt--gataaccatttatctcacatgcttgaccgcattctcttggta |
23032900 |
T |
|
| Q |
858 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
957 |
Q |
| |
|
| |||||||| ||| |||||| ||||| | ||| ||||| || ||||| || |||||| |||| || || ||||||| ||||| ||||||||||| |
|
|
| T |
23032901 |
gcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaattttcatcaacctttcctttcat |
23033000 |
T |
|
| Q |
958 |
gttggaatatttctcttacctcatcttgtgctttcttcat |
997 |
Q |
| |
|
|| ||| | ||||| |||||| |||||||||||||||| |
|
|
| T |
23033001 |
-tttgaaaacctctctcacctcagcttgtgctttcttcat |
23033039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 564 - 903
Target Start/End: Complemental strand, 22941666 - 22941327
Alignment:
| Q |
564 |
cattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagc |
663 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||||| |||||||||| | |||||||||||| || ||||| |||||||||||||| |
|
|
| T |
22941666 |
cattgggaagtttccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgttactcccggacacattcttcttccagc |
22941567 |
T |
|
| Q |
664 |
accaaagggaatgtactcaaaattattccctttgta--gaatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttgga |
761 |
Q |
| |
|
|||||| |||||| ||||||||||||| || || || | | | || | || || || || |||||||| |||||||| ||| ||| | |||||| |
|
|
| T |
22941566 |
accaaatggaatgaactcaaaattatttcccttataatctacacaactttcaataaacctttcaggataaaatctctctgggtcatcccaatgatttgga |
22941467 |
T |
|
| Q |
762 |
tctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagtaa |
861 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| |||||||| | ||||||| |||||||| || |||| |||||||||||||||||||||||| || |
|
|
| T |
22941466 |
tctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatttcacatgcttgtccacattctcttggaagcaa |
22941369 |
T |
|
| Q |
862 |
aagaggacctggagggtgtaaccttaaggtctctttcacaac |
903 |
Q |
| |
|
|| | | | |||||||| || || || |||||||||||||| |
|
|
| T |
22941368 |
aaatgcagcaggagggtgcaatctcaatgtctctttcacaac |
22941327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 564 - 863
Target Start/End: Original strand, 22831743 - 22832042
Alignment:
| Q |
564 |
cattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtg-ctacctggacatattcttcttccag |
662 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || ||||||||||| |||||||||| | ||||||||||||| || || ||| | |||||||| |||| |
|
|
| T |
22831743 |
cattgagaagtttccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgtgactgcc-ggaaacattcttctaccag |
22831841 |
T |
|
| Q |
663 |
caccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttgg |
760 |
Q |
| |
|
||||||| |||||| ||||||||||||| || || ||| | | | ||| | |||||||| || |||||||| || ||||| || ||| | ||||| |
|
|
| T |
22831842 |
caccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttgg |
22831941 |
T |
|
| Q |
761 |
atctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagta |
860 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||| |||||||| | ||||||| |||||||| ||||||| ||||| |||||||||||||||||| | |
|
|
| T |
22831942 |
atctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatctcacatgcttttccacattctcttggaagca |
22832039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 556 - 915
Target Start/End: Complemental strand, 22916974 - 22916612
Alignment:
| Q |
556 |
tttcattccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctt |
655 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| || ||||||||||| ||||||| ||| | ||| ||||||||| |||||||| |||||| |
|
|
| T |
22916974 |
tttcattgcattgggaagtttccaatcaaagtgatacatcaacaatgcaagtgaaaactcaatattgaccaatccaaatgtgacccctggacacattctt |
22916875 |
T |
|
| Q |
656 |
cttccagcaccaaagggaatgtactcaaaattattccctttgt-agaat----agagctaccgatgaatctctctggataaaacctctctggttcagtcc |
750 |
Q |
| |
|
|| ||| ||||| |||||| ||||||||||||| ||||||| | ||| | | | ||||||| || || |||||||| || ||||| ||| || |
|
|
| T |
22916874 |
ctgccactgccaaacggaatgaactcaaaattattacctttgtaataatctacacaattgtcgatgaacctttcaggataaaatctttctggatcatccc |
22916775 |
T |
|
| Q |
751 |
agtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattct |
850 |
Q |
| |
|
| | ||||||||||||||||| ||||| ||||| |||||||| |||||||| | ||| |||| |||||||| || |||| |||||||||||| || |
|
|
| T |
22916774 |
aattatttggatctcttccaatggcccaagcattcactatcactttgcttttaaatgg--tataccatacccatttatttcacatgcttgtccacactcc |
22916677 |
T |
|
| Q |
851 |
cttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaata |
915 |
Q |
| |
|
||||| | ||||| | || ||||| ||||| || || |||||||||||||| |||||||||| |
|
|
| T |
22916676 |
cttggcaataaaaatgctccaggaggatgtaatctcaatgtctctttcacaacacactttaaata |
22916612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 488 - 870
Target Start/End: Original strand, 22946236 - 22946618
Alignment:
| Q |
488 |
atcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaagcttccaatcaaagt |
587 |
Q |
| |
|
|||||||| | ||||||||| ||| | || | ||||||||| |||||||||||| || ||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
22946236 |
atcaaatataggtcatctttccttataacagaagctccaaatagctcagtcatgtccaaatcctcatttttcattccaccaggaagtttccaatcaaagt |
22946335 |
T |
|
| Q |
588 |
gatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaatt |
687 |
Q |
| |
|
| |||| | ||| ||||||| || |||||||||| || ||| | || | || ||||| ||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
22946336 |
ggcacaataacaaagcaagtgtcagctcaacatttgccataccgtagttgatgcccggacaaattctccttccggcaccaaatggaatgtactcaaaatt |
22946435 |
T |
|
| Q |
688 |
attccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattg |
785 |
Q |
| |
|
| |||||| | || ||| ||| | || ||||| || ||||||||| | ||||| |||||||| || |||||||| |||||||| ||||| |||||| |
|
|
| T |
22946436 |
tgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttggatcccttccaattgcccaagcattg |
22946535 |
T |
|
| Q |
786 |
actatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagtaaaagaggacc |
870 |
Q |
| |
|
| ||||||| | || ||||||||||| | ||| ||||||||||||| ||||||| |||| | || |||| |||||||||||| |
|
|
| T |
22946536 |
attatcaccctactattgattggtatgt--gataaccatcaatctcacatgcttgtgcacacaccctaggaattaaaagaggacc |
22946618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 568 - 915
Target Start/End: Original strand, 22932125 - 22932475
Alignment:
| Q |
568 |
gggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcacca |
667 |
Q |
| |
|
|||||| |||||||||||||| |||| || ||||||||||| ||||||||| | | ||| |||||||| |||||||| |||||||| ||| ||| |
|
|
| T |
22932125 |
gggaagtttccaatcaaagtggtacatcaacaatgcaagtgaaaactcaacactgaccaatccaaatgtaacccctggacacattcttctgccactgcca |
22932224 |
T |
|
| Q |
668 |
aagggaatgtactcaaaattattccctttgt-agaat----agagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggat |
762 |
Q |
| |
|
|| |||||| ||||||||||||| ||||||| | ||| | | | ||||||| || || |||||||| || ||||| ||| ||| | ||||||| |
|
|
| T |
22932225 |
aacggaatgaactcaaaattattacctttgtaataatctacacaattgtcgatgaacctttcaggataaaatctttctggatcatcccaattatttggat |
22932324 |
T |
|
| Q |
763 |
ctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagtaaa |
862 |
Q |
| |
|
|||||||||| ||||| |||| ||||| || |||||||| | ||| ||| |||||||| || |||| |||||||||||| || ||||| | |||| |
|
|
| T |
22932325 |
ctcttccaatggcccaaacattcactattactttgcttttaaatgg--gataccatacccatttatttcacatgcttgtccacactcccttggcaataaa |
22932422 |
T |
|
| Q |
863 |
agaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaata |
915 |
Q |
| |
|
| | ||| ||||||||||| || || |||||||||||||| |||||||||| |
|
|
| T |
22932423 |
aatgcaccaggagggtgtaatctcaatgtctctttcacaacacactttaaata |
22932475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 560 - 697
Target Start/End: Original strand, 22986181 - 22986318
Alignment:
| Q |
560 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
659 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || | |||||| | |||||||||| || |||| | | | || ||||| ||||| |||| |
|
|
| T |
22986181 |
attccattgggaagtttccaatcaaaatgatacaatatgagtgcaaggacttgctcaacatttgccataccataattcatgccaggacaaattctccttc |
22986280 |
T |
|
| Q |
660 |
cagcaccaaagggaatgtactcaaaattattccctttg |
697 |
Q |
| |
|
|||||||||| |||||||||||||||||| | |||||| |
|
|
| T |
22986281 |
cagcaccaaatggaatgtactcaaaattagttcctttg |
22986318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 9e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 569 - 1017
Target Start/End: Original strand, 21779726 - 21780173
Alignment:
| Q |
569 |
ggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaa |
668 |
Q |
| |
|
||||||||||| ||||| |||||||||| || ||||| | | ||||| |||| |||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
21779726 |
ggaagcttccagtcaaaatgatacaacaacatcgcaagggtcgtctcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaa |
21779825 |
T |
|
| Q |
669 |
agggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctct |
766 |
Q |
| |
|
| |||||||||||||||||| ||||||| || |||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
21779826 |
atggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtccagtagtttggatctct |
21779925 |
T |
|
| Q |
767 |
tccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagtaaaagag |
866 |
Q |
| |
|
| |||| ||||| ||||||| ||||||||| | || || || || | || |||| || |||| |||||| | ||||||||| || | ||||||| |
|
|
| T |
21779926 |
tgcaattgcccaagcattgattatcaccttagtcttaatcggaatgt--ggtaaccatttatatcacatgcttgactacattctctcggtaacaaaagag |
21780023 |
T |
|
| Q |
867 |
gacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttggaata |
966 |
Q |
| |
|
| |||||||||||| ||||||||| ||||| |||||||| || |||||| |||||||||| || |||||||| ||||| |||||||||| || ||| | |
|
|
| T |
21780024 |
gtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcat-tttgaaaa |
21780122 |
T |
|
| Q |
967 |
tttctcttacctcatcttgtgctttcttcatcactcttttatcccttacca |
1017 |
Q |
| |
|
|||||| || |||||||||||||||||||| | |||| ||||||||||| |
|
|
| T |
21780123 |
cttctctcacttcatcttgtgctttcttcattattcttggatcccttacca |
21780173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 123; Significance: 1e-62; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 569 - 923
Target Start/End: Complemental strand, 6841 - 6487
Alignment:
| Q |
569 |
ggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaa |
668 |
Q |
| |
|
||||||||||| ||||| |||||||||| || ||||| |||| |||||||||| ||||||||||| | || ||||| || ||||||||||||||||||| |
|
|
| T |
6841 |
ggaagcttccagtcaaaatgatacaacaacatcgcaagcgccagctcaacatttctcaaaccaaatatacttcctgggcaaattcttcttccagcaccaa |
6742 |
T |
|
| Q |
669 |
agggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctct |
766 |
Q |
| |
|
| |||||||||||||||||| |||||| ||| ||||| ||| | |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
6741 |
aaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtccagaagtttggatctct |
6642 |
T |
|
| Q |
767 |
tccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagtaaaagag |
866 |
Q |
| |
|
| |||| ||||| ||||||| ||||||||| || | | ||||| | |||| |||| ||||||| ||||| |||||||||||||| || ||||||| |
|
|
| T |
6641 |
tgcaattgcccaagcattgattatcaccttactcctaaacggtatgt--tataaccatttatctcacatgctttaccacattctcttggtagcaaaagag |
6544 |
T |
|
| Q |
867 |
gacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagtt |
923 |
Q |
| |
|
| |||||||||||||||| | ||| ||||| || ||||| || |||||| |||||| |
|
|
| T |
6543 |
gtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtt |
6487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 564 - 863
Target Start/End: Complemental strand, 5594322 - 5594023
Alignment:
| Q |
564 |
cattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtg-ctacctggacatattcttcttccag |
662 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || ||||||||||| |||||||||| | ||||||||||||| || || ||| | |||||||| |||| |
|
|
| T |
5594322 |
cattgagaagtttccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgtgactgcc-ggaaacattcttctaccag |
5594224 |
T |
|
| Q |
663 |
caccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttgg |
760 |
Q |
| |
|
||||||| |||||| ||||||||||||| || || ||| | | | ||| | |||||||| || |||||||| || ||||| || ||| | ||||| |
|
|
| T |
5594223 |
caccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttgg |
5594124 |
T |
|
| Q |
761 |
atctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttggaagta |
860 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||| |||||||| | ||||||| |||||||| ||||||| ||||| |||||||||||||||||| | |
|
|
| T |
5594123 |
atctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatctcacatgcttttccacattctcttggaagca |
5594026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 556 - 594
Target Start/End: Original strand, 23610117 - 23610155
Alignment:
| Q |
556 |
tttcattccattgggaagcttccaatcaaagtgatacaa |
594 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
23610117 |
tttcattccattgggaagtttccaatcaaaatgatacaa |
23610155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 641 - 697
Target Start/End: Complemental strand, 7154548 - 7154492
Alignment:
| Q |
641 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttg |
697 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
7154548 |
cctggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttg |
7154492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 741 - 793
Target Start/End: Complemental strand, 41465854 - 41465802
Alignment:
| Q |
741 |
ggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcac |
793 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41465854 |
ggttcactccaatactttggatctcttccaatcgcccatgcatttactatcac |
41465802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 557 - 591
Target Start/End: Complemental strand, 41317229 - 41317195
Alignment:
| Q |
557 |
ttcattccattgggaagcttccaatcaaagtgata |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41317229 |
ttcattccattgggaagcttccaatcaaagtgata |
41317195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 558 - 591
Target Start/End: Complemental strand, 41329269 - 41329236
Alignment:
| Q |
558 |
tcattccattgggaagcttccaatcaaagtgata |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41329269 |
tcattccattgggaagcttccaatcaaagtgata |
41329236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 557 - 591
Target Start/End: Complemental strand, 41287395 - 41287361
Alignment:
| Q |
557 |
ttcattccattgggaagcttccaatcaaagtgata |
591 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
41287395 |
ttcattccattgagaagcttccaatcaaagtgata |
41287361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 753 - 787
Target Start/End: Complemental strand, 41305343 - 41305309
Alignment:
| Q |
753 |
tactttggatctcttccaatcgcccatgcattgac |
787 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
41305343 |
tactttggatctcttccaatcgcccaagcattgac |
41305309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 630 - 699
Target Start/End: Complemental strand, 2433708 - 2433639
Alignment:
| Q |
630 |
caaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgta |
699 |
Q |
| |
|
|||||||| | |||||||||||||| ||||| |||||||| || ||||||||||||||| ||||||||| |
|
|
| T |
2433708 |
caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaaattagaccctttgta |
2433639 |
T |
|
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