View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0602-INSERTION-12 (Length: 400)
Name: NF0602-INSERTION-12
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-INSERTION-12 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 6 - 400
Target Start/End: Complemental strand, 11531544 - 11531134
Alignment:
| Q |
6 |
caatacaaactagtaagctcaacacaaacaaaaattttgcacccatttttcagattttttatccaacctatggtacttaggttctgactttatgagatta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11531544 |
caatacaaactagtaagctcaacacaaacaaaaattttgcacccatttttcagattttttatccaacctatggtacttaggttctgactttatgagatta |
11531445 |
T |
|
| Q |
106 |
----agtacactacttttttatatagtacttcaaagaaatcaagtggattttatgccgaagatttcttactcatnnnnnnnntttgttgatgatttctta |
201 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||| |
|
|
| T |
11531444 |
agtaagtacactac---tttatatagtacttctaagaaatcaagtggattttatgccaatgacttcttactcataaaaaaaaattgttgatgatttctta |
11531348 |
T |
|
| Q |
202 |
cca-------------------aattattaggatatgccattacatgtaagagaaatattcaatattttttatatttttggaaacattagcggtatccat |
282 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11531347 |
ccaaaaaagaaaatgcctatataattattaggatatgccattacatgtaagagaaatattcaatattttttatatttttggaaacattagcggtatccat |
11531248 |
T |
|
| Q |
283 |
atatatcaaataaaaaattaaaatactttccagagataaatgtcaaagnnnnnnnttaatattatggataattattatccggggatcaattttaggagaa |
382 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11531247 |
atatatca---atcaaattaaaatactttccagagataaatgtcaaag-aaaattttaatattatggataattattatccggggatcaattttaggagaa |
11531152 |
T |
|
| Q |
383 |
tatttcattgattagatg |
400 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11531151 |
tatttcattgattagatg |
11531134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 26299104 - 26299037
Alignment:
| Q |
5 |
acaatacaaactagtaagctcaacacaaacaaaaattttgcacccatttttcagattttttatccaac |
72 |
Q |
| |
|
|||||||||||||| ||| |||| | |||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
26299104 |
acaatacaaactagcaagatcaagagaaacaaaacattttcacccatttttcagattatttatccaac |
26299037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 10980390 - 10980459
Alignment:
| Q |
7 |
aatacaaactagtaagctcaacacaaacaaaaattttgcaccca-tttttcagattttttatccaaccta |
75 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||| || ||| || |||||||||| |||||||||||||| |
|
|
| T |
10980390 |
aatacaaattggtaagctcaagacaaacaaaaaaattacacgcattttttcagatattttatccaaccta |
10980459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 13614520 - 13614455
Alignment:
| Q |
7 |
aatacaaactagtaagctcaacacaaacaaaaattttgcacccatttttcagattttttatccaac |
72 |
Q |
| |
|
|||| ||||||| ||| |||| | |||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
13614520 |
aatataaactagcaagatcaagagaaacaaaacatttccacccatttttcagattatttatccaac |
13614455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2222 times since January 2019
Visitors: 3815