View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0602-INSERTION-13 (Length: 1037)
Name: NF0602-INSERTION-13
Description: NF0602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0602-INSERTION-13 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 692 - 999
Target Start/End: Complemental strand, 20371058 - 20370746
Alignment:
| Q |
692 |
tgtaaacctcctctctctcttgtttggttgagtagaaaatgagaagagagaaatgacaatattttagacattgacaaaaatagccttgttataatgaaac |
791 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20371058 |
tgtaaacctcctctctctcttgtttggttgagtagaaaatgagaagagagaaatgacaatattttagacattgacaaaaatagccttgttataatgaaac |
20370959 |
T |
|
| Q |
792 |
aatttaacaatctaaaccttatattaccaaaacttgaattgctac-aaatactacaaaagcttattattttaattttgggtgagatcctgttggtgctct |
890 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20370958 |
aatttaacaatctaaaccttatattaccaaaacttgaattgctacaaaatactataaaagcttattattttaattttgggtgagatcctgttggtgctct |
20370859 |
T |
|
| Q |
891 |
tgataatattttttaaacaatcaaaatttagtgannnnnnnnnaataaccaaaacttctttt--atcattgtatcatgtag-agaagtacacaaacat-a |
986 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |
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| T |
20370858 |
tgataatattttttaaacaatcaaaatttagtgatttttttttaataaccaaaacttctttttaatcattgtatcatgtagaagaagtacacaaacataa |
20370759 |
T |
|
| Q |
987 |
taaaaagtgaatt |
999 |
Q |
| |
|
||||||||||||| |
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|
| T |
20370758 |
taaaaagtgaatt |
20370746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 78 - 293
Target Start/End: Original strand, 6695433 - 6695648
Alignment:
| Q |
78 |
tttttgccccaactagggacacagattgaaatattttcgcccgtttctcgttgaggaattaggacaattgcagttgcaactcccccacacgtgcccctaa |
177 |
Q |
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| T |
6695433 |
tttttgccccaactagggacacagattgaaatattttcgcccgtttctcgttgaggaattaggacaattgcagttgcaactcccccacacgtgcccctaa |
6695532 |
T |
|
| Q |
178 |
tgtctctgtgtatgcaatctgctttgttttctctattttgcccctatatgcctagggttaaaatgtaatttggtctttaatgcgtgagacgttgtcacta |
277 |
Q |
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| T |
6695533 |
tgtctctgtgtatgcaatctgctttgttttctctattttgcccctatatgcctagggttaaaatgtaatttggtctttaatgcgtgagacgttgtcacta |
6695632 |
T |
|
| Q |
278 |
gcttggatagagtttc |
293 |
Q |
| |
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||||||||||||||| |
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| T |
6695633 |
acttggatagagtttc |
6695648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 474 - 547
Target Start/End: Original strand, 6697426 - 6697499
Alignment:
| Q |
474 |
gactacattaaatctaatttccactaactcattgtagtatttataatgtgtcacaatttcaacaacatgtttaa |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||| |
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|
| T |
6697426 |
gactacattaaatctaatttccactaactcattgtagtatttataatgtgtcagaattttaagaagatgtttaa |
6697499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 6695372 - 6695420
Alignment:
| Q |
7 |
accatgtttggaaatgaaagaacgagttgggttttttgttgactcagtc |
55 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
6695372 |
accatgtttggaaatgaaagaacgagttgggttttttcttgactcagtc |
6695420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 6695647 - 6695703
Alignment:
| Q |
316 |
tcgagaagcatgcattcacacatttcggca---ttgttattcgttcgataaatatta |
369 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |
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|
| T |
6695647 |
tcgagaagcatgcattcacacgtttgggcattgttgttattcgttcgataaatatta |
6695703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 699 - 897
Target Start/End: Complemental strand, 50369191 - 50368990
Alignment:
| Q |
699 |
ctcctctctctcttgtttggttgagtagaaaatgagaagagaga--aatgacaatattttagacattgacaaaaatagccttgttataatgaaacaattt |
796 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50369191 |
ctcctctctctcttgtttggttgagtagaaaatgagaagagagagaaatgacaatattttagacattgacaaaaatagccttgttataatgaaacaattt |
50369092 |
T |
|
| Q |
797 |
aacaatctaaaccttatattaccaaaacttgaattgctac-aaatactacaaaagcttattattttaattttgggtgagatcctgttggtgctcttgata |
895 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||| |
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| T |
50369091 |
aacattctaaaccttatattaccaaaacttgaattgctacaaaatactacaaaagctaattattataattttgggtgagatcctgttagtgctctcgata |
50368992 |
T |
|
| Q |
896 |
at |
897 |
Q |
| |
|
|| |
|
|
| T |
50368991 |
at |
50368990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 692 - 999
Target Start/End: Complemental strand, 24358270 - 24357974
Alignment:
| Q |
692 |
tgtaaacctcctctctctcttgtttggttgagtagaaaatgagaagagagaaatgacaatattttagacattgacaaaaatagccttgttataatgaaac |
791 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358270 |
tgtaaacctcctctctctcttgtttggttgagtagaaagtgagaagagagaaatgacaatattttagacattgacaaaaatagccttgttataatgaaac |
24358171 |
T |
|
| Q |
792 |
aatttaacaatctaaaccttatattaccaaaacttgaattgcta-caaatactacaaaagcttattattttaattttgggtgagatcctgttggtgctct |
890 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
24358170 |
aattgaacactct--------tattaccaaaacttgaattgcaataaaatactacaaaagctcattattttaattttgggtgagatcc------tgctct |
24358085 |
T |
|
| Q |
891 |
tgataatattttttaaacaatcaaaatttagtgannnnnnnnnaataaccaaaac-ttcttttatcattgtatcatgtag-agaagtacacaaaca-tat |
987 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| ||||| ||||||||||||||| || |
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|
| T |
24358084 |
cgataattttttttaaacaatcaaaatttagtga-tattttttaataaccaaaacttttttttatcattgtatcttgtagaagaagtacacaaacacaat |
24357986 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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